Gene Expression Nebulas
基于标准化流程分析的转录图谱综合数据库

Gene Expression Nebulas

多物种转录图谱整合数据库

PRJNA765577: Controlled administration of aerosolized SARS-CoV-2 to K18-hACE2 transgenic mice uncouples respiratory infection and anosmia from fatal neuroinvasion

来源: NCBI / GSE184657
提交时间: Sep 23 2021
释放时间: Nov 23 2021
最后更新时间: Nov 24 2021

概要: The development of tractable animal models that faithfully reproduce COVID-19 pathogenesis would arguably be a major benefit. Infection of transgenic mice expressing the human version of the SARS-CoV-2 receptor (hACE2) by intranasal instillation of a liquid SARS-CoV-2 suspension under deep anesthesia results in disproportionate high CNS infection leading to fatal encephalitis, which is rarely observed in humans and severely limits this model’s usefulness. Here, we describe the characterization of a novel COVID-19 mouse model based on an inhalation tower system that allows to expose unanesthetized mice to aerosolized virus under controlled conditions. Aerosol exposure of K18-hACE2 transgenic mice to SARS-CoV-2 resulted in robust viral replication in the respiratory tract, anosmia, and airway obstruction, but did not lead to fatal viral neuroinvasion. When compared to intranasal inoculation, aerosol infection resulted in a more pronounced lung pathology including increased immune infiltration, fibrin deposition and a transcriptional signature comparable to that observed in humans. This model may prove useful for studies of viral transmission, disease pathogenesis (including long-term consequences of SARS-CoV-2 infection) and therapeutic interventions.

项目整体设计: Bulk RNA-seq of lung homogenates 6 days after SARS-CoV-2 infection. Comparison between intranasal- (n=3) and aerosol- (n=4) infected mice, 2 PBS-treated mice are added as control

GEN 数据集:
GEND000391
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生长方案: -
处理方案: -
提取方案: 100 ml of Chloroform were added in 500 ml of homogenized sample and total RNA was extracted using ReliaPrep™ RNA Tissue Miniprep column (Promega, Cat #Z6111). Total RNA was isolated according to the manufacturer’s instructions. qPCR was performed using TaqMan Fast virus 1 Step PCR Master Mix (Lifetechnologies #4444434), standard curve was drawn with 2019_nCOV_N Positive control (IDT#10006625), primer used are: 2019-nCoV_N1- Forward Primer (5’-GAC CCC AAA ATC AGC GAA AT-3’), 2019-nCoV_N1- Reverse Primer (5’-TCT GGT TAC TGC CAG TTG AAT CTG-3’) 2019-nCoV_N1-Probe (5’-FAM-ACC CCG CAT TAC GTT TGG TGG ACC-BHQ1-3’) (Centers for Disease Control and Prevention (CDC) Atlanta, GA 30333)
建库方案: Libraries were purified with AMPure XP beads, quantified using Qubit 3.0 and single-end sequenced (75 bp) on an Illumina NextSeq 500.
测序信息
分子类型: rRNA- RNA
库的片段类型: SINGLE
库的链类型: -
测序平台: ILLUMINA
测序仪型号: Illumina NextSeq 500
链特异性: Unspecific
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数据来源 GEN样本编号 GEN数据集编号 系列编号 项目编号 样本编号 样本名称 生物样本编号 样本访问号 实验访问号 释放时间 提交时间 最后更新时间 物种 种族 族裔 年龄 年龄单位 性别 来源名称 组织 细胞类型 细胞亚型 细胞系 疾病 疾病状态 发育阶段 突变/变异 表型 Condition Detail 生长方案 处理方案 提取方案 建库方案 分子类型 库的片段类型 链特异性 库的链类型 加标(Spike-In) 测序方法 测序平台 测序仪型号 细胞数 测序片段数 碱基数 平均测序片段长度_1 平均测序片段长度_2 唯一比对率 多重比对率 覆盖度
文章
Administration of aerosolized SARS-CoV-2 to K18-hACE2 mice uncouples respiratory infection from fatal neuroinvasion.
Science immunology . 2022-01-28 [PMID: 34812647]