Gene Expression
Nebulas
Gene Expression Nebulas| Download | Dataset ID | BioProject ID | Project ID | Dataset Name | Species | Strategy | Sample Number | Tissue | Cell Type | Cell Line | Healthy Condition | Development Stage | Case Detail | Control Detail | Cell Number | Biological Condition | Quality and Quantity | |||||||||
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| Baseline | Genetic | Phenotypic | Environmental | Spatial | Temporal | RNA Type | Median Mapping Quality | Median Coverage | Max Sequencing Length | Max Replicate# | ||||||||||||||||
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Charting cellular identity during human in vitro β-cell differentiation.
Veres A, Faust AL, Bushnell HL, Engquist EN, Kenty JH, Harb G, Poh YC, Sintov E, Gürtler M, Pagliuca FW, Peterson QP, Melton DA.
Nature. 2019-05-08; 569 (7756)
PMID: 31068696 DOI: 10.1038/s41586-019-1168-5
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Comparative single-cell RNA sequencing (scRNA-seq) reveals liver metastasis-specific targets in a patient with small intestinal neuroendocrine cancer.
Rao M, Oh K, Moffitt R, Thompson P, Li J, Liu J, Sasson A, Georgakis G, Kim J, Choi M, Powers S.
Cold Spring Harb Mol Case Stud. 2020-04-01; 6 (2)
PMID: 32054662 DOI: 10.1101/mcs.a004978
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Pharmacodynamic biomarkers and differential effects of TNF- and GM-CSF-targeting biologics in rheumatoid arthritis.
Guo X, Wang S, Godwood A, Close D, Ryan PC, Roskos LK, White WI.
Int J Rheum Dis. 2018-10-24; 22 (4)
PMID: 30358109 DOI: 10.1111/1756-185x.13395
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Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms.
Li B, Tsoi LC, Swindell WR, Gudjonsson JE, Tejasvi T, Johnston A, Ding J, Stuart PE, Xing X, Kochkodan JJ, Voorhees JJ, Kang HM, Nair RP, Abecasis GR, Elder JT.
J Invest Dermatol. 2014-01-17; 134 (7)
PMID: 24441097 DOI: 10.1038/jid.2014.28
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Single cell transcriptome profiling of the human alcohol-dependent brain.
Brenner E, Tiwari GR, Kapoor M, Liu Y, Brock A, Mayfield RD.
Hum Mol Genet. 2020-05-01; 29 (7)
PMID: 32142123 DOI: 10.1093/hmg/ddaa038
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Adaptive from Innate: Human IFN-γ+CD4+ T Cells Can Arise Directly from CXCL8-Producing Recent Thymic Emigrants in Babies and Adults.
Das A, Rouault-Pierre K, Kamdar S, Gomez-Tourino I, Wood K, Donaldson I, Mein CA, Bonnet D, Hayday AC, Gibbons DL.
J Immunol. 2017-07-28; 199 (5)
PMID: 28754679 DOI: 10.4049/jimmunol.1700551
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Regenerative lineages and immune-mediated pruning in lung cancer metastasis.
Laughney AM, Hu J, Campbell NR, Bakhoum SF, Setty M, Lavallée VP, Xie Y, Masilionis I, Carr AJ, Kottapalli S, Allaj V, Mattar M, Rekhtman N, Xavier JB, Mazutis L, Poirier JT, Rudin CM, Pe'er D, Massagué J.
Nat Med. 2020-02-10; 26 (2)
PMID: 32042191 DOI: 10.1038/s41591-019-0750-6
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Controlled modelling of human epiblast and amnion development using stem cells.
Zheng Y, Xue X, Shao Y, Wang S, Esfahani SN, Li Z, Muncie JM, Lakins JN, Weaver VM, Gumucio DL, Fu J.
Nature. 2019-09-11; 573 (7774)
PMID: 31511693 DOI: 10.1038/s41586-019-1535-2
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Cell fixation and preservation for droplet-based single-cell transcriptomics.
Alles J, Karaiskos N, Praktiknjo SD, Grosswendt S, Wahle P, Ruffault PL, Ayoub S, Schreyer L, Boltengagen A, Birchmeier C, Zinzen R, Kocks C, Rajewsky N.
BMC Biol. 2017-05-19; 15 (1)
PMID: 28526029 DOI: 10.1186/s12915-017-0383-5
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High-Throughput Screening Enhances Kidney Organoid Differentiation from Human Pluripotent Stem Cells and Enables Automated Multidimensional Phenotyping.
Czerniecki SM, Cruz NM, Harder JL, Menon R, Annis J, Otto EA, Gulieva RE, Islas LV, Kim YK, Tran LM, Martins TJ, Pippin JW, Fu H, Kretzler M, Shankland SJ, Himmelfarb J, Moon RT, Paragas N, Freedman BS.
Cell Stem Cell. 2018-05-17; 22 (6)
PMID: 29779890 DOI: 10.1016/j.stem.2018.04.022
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Dissecting the Single-Cell Transcriptome Network Underlying Gastric Premalignant Lesions and Early Gastric Cancer.
Zhang P, Yang M, Zhang Y, Xiao S, Lai X, Tan A, Du S, Li S.
Cell Rep. 2019-05-01; 27 (6)
PMID: 31067475 DOI: 10.1016/j.celrep.2019.04.052
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Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution.
Gao L, Wu K, Liu Z, Yao X, Yuan S, Tao W, Yi L, Yu G, Hou Z, Fan D, Tian Y, Liu J, Chen ZJ, Liu J.
Cell. 2018-03-08; 173 (1)
PMID: 29526463 DOI: 10.1016/j.cell.2018.02.028
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Pseudotime Dynamics in Melanoma Single-Cell Transcriptomes Reveals Different Mechanisms of Tumor Progression.
Loeffler-Wirth H, Binder H, Willscher E, Gerber T, Kunz M.
Biology (Basel). 2018-04-03; 7 (2)
PMID: 29614062 DOI: 10.3390/biology7020023
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Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis.
Shchetynsky K, Diaz-Gallo LM, Folkersen L, Hensvold AH, Catrina AI, Berg L, Klareskog L, Padyukov L.
Arthritis Res Ther. 2017-02-02; 19 (1)
PMID: 28148290 DOI: 10.1186/s13075-017-1220-5
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Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Menon M, Mohammadi S, Davila-Velderrain J, Goods BA, Cadwell TD, Xing Y, Stemmer-Rachamimov A, Shalek AK, Love JC, Kellis M, Hafler BP.
Nat Commun. 2019-10-25; 10 (1)
PMID: 31653841 DOI: 10.1038/s41467-019-12780-8
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Zika virus shedding in the stool and infection through the anorectal mucosa in mice.
Li C, Deng YQ, Zu S, Quanquin N, Shang J, Tian M, Ji X, Zhang NN, Dong HL, Xu YP, Zhao LZ, Zhang FC, Li XF, Wu A, Cheng G, Qin CF.
Emerg Microbes Infect. 2018-10-17; 7 (1)
PMID: 30333476 DOI: 10.1038/s41426-018-0170-6
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Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells.
Xie S, Duan J, Li B, Zhou P, Hon GC.
Mol Cell. 2017-04-13; 66 (2)
PMID: 28416141 DOI: 10.1016/j.molcel.2017.03.007
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Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets.
Aulicino A, Rue-Albrecht KC, Preciado-Llanes L, Napolitani G, Ashley N, Cribbs A, Koth J, Lagerholm BC, Ambrose T, Gordon MA, Sims D, Simmons A, Simmons A.
Nat Commun. 2018-11-19; 9 (1)
PMID: 30451854 DOI: 10.1038/s41467-018-07329-0
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Vascular Damage, Thromboinflammation, Plasmablast Activation, T-Cell Dysregulation and Pathological Histiocytic Response in Pulmonary Draining Lymph Nodes of COVID-19.
Haslbauer JD, Zinner C, Stalder AK, Schneeberger J, Menter T, Bassetti S, Mertz KD, Went P, Matter MS, Tzankov A.
Front Immunol. 2021-12-13; 12
PMID: 34966385 DOI: 10.3389/fimmu.2021.763098
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Single-cell multiomics sequencing and analyses of human colorectal cancer.
Bian S, Hou Y, Zhou X, Li X, Yong J, Wang Y, Wang W, Yan J, Hu B, Guo H, Wang J, Gao S, Mao Y, Dong J, Zhu P, Xiu D, Yan L, Wen L, Qiao J, Tang F, Fu W.
Science. 2018-11-01; 362 (6418)
PMID: 30498128 DOI: 10.1126/science.aao3791
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Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface.
Pavličev M, Wagner GP, Chavan AR, Owens K, Maziarz J, Dunn-Fletcher C, Kallapur SG, Muglia L, Jones H.
Genome Res. 2017-02-07; 27 (3)
PMID: 28174237 DOI: 10.1101/gr.207597.116
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Long-term perturbation of the peripheral immune system months after SARS-CoV-2 infection.
Ryan FJ, Hope CM, Masavuli MG, Lynn MA, Mekonnen ZA, Yeow AEL, Garcia-Valtanen P, Al-Delfi Z, Gummow J, Ferguson C, O'Connor S, Reddi BAJ, Hissaria P, Shaw D, Kok-Lim C, Gleadle JM, Beard MR, Barry SC, Grubor-Bauk B, Lynn DJ.
BMC Med. 2022-01-14; 20 (1)
PMID: 35027067 DOI: 10.1186/s12916-021-02228-6
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Triple DMARD treatment in early rheumatoid arthritis modulates synovial T cell activation and plasmablast/plasma cell differentiation pathways.
Walsh AM, Wechalekar MD, Guo Y, Yin X, Weedon H, Proudman SM, Smith MD, Nagpal S.
PLoS One. 2017-09-01; 12 (9)
PMID: 28863153 DOI: 10.1371/journal.pone.0183928
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SC3: consensus clustering of single-cell RNA-seq data.
Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M.
Nat Methods. 2017-03-27; 14 (5)
PMID: 28346451 DOI: 10.1038/nmeth.4236
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Regulatory KIR+ RA+ T cells accumulate with age and are highly activated during viral respiratory disease.
Pieren DKJ, Smits NAM, Hoeboer J, Kandiah V, Postel RJ, Mariman R, van Beek J, van Baarle D, de Wit J, Guichelaar T.
Aging Cell. 2021-05-27; 20 (6)
PMID: 34043881 DOI: 10.1111/acel.13372
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Molecular Profiling of Coronavirus Disease 2019 (COVID-19) Autopsies Uncovers Novel Disease Mechanisms.
Pujadas E, Beaumont M, Shah H, Schrode N, Francoeur N, Shroff S, Bryce C, Grimes Z, Gregory J, Donnelly R, Fowkes ME, Beaumont KG, Sebra R, Cordon-Cardo C.
Am J Pathol. 2021-09-08; 191 (12)
PMID: 34506752 DOI: 10.1016/j.ajpath.2021.08.009
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Androgen signaling uses a writer and a reader of ADP-ribosylation to regulate protein complex assembly.
Yang CS, Jividen K, Kamata T, Dworak N, Oostdyk L, Remlein B, Pourfarjam Y, Kim IK, Du KP, Abbas T, Sherman NE, Wotton D, Paschal BM.
Nat Commun. 2021-05-11; 12 (1)
PMID: 33976187 DOI: 10.1038/s41467-021-23055-6
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A virus-derived microRNA targets immune response genes during SARS-CoV-2 infection.
Singh M, Chazal M, Quarato P, Bourdon L, Malabat C, Vallet T, Vignuzzi M, van der Werf S, Behillil S, Donati F, Sauvonnet N, Nigro G, Bourgine M, Jouvenet N, Cecere G.
EMBO Rep. 2021-12-16; 23 (2)
PMID: 34914162 DOI: 10.15252/embr.202154341
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Dysregulated transcriptional responses to SARS-CoV-2 in the periphery.
McClain MT, Constantine FJ, Henao R, Liu Y, Tsalik EL, Burke TW, Steinbrink JM, Petzold E, Nicholson BP, Rolfe R, Kraft BD, Kelly MS, Saban DR, Yu C, Shen X, Ko EM, Sempowski GD, Denny TN, Ginsburg GS, Woods CW.
Nat Commun. 2021-02-17; 12 (1)
PMID: 33597532 DOI: 10.1038/s41467-021-21289-y
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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM, Melton DA, Yanai I.
Cell Syst. 2016-09-22; 3 (4)
PMID: 27667365 DOI: 10.1016/j.cels.2016.08.011
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Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome.
Yang C, Siebert JR, Burns R, Gerbec ZJ, Bonacci B, Rymaszewski A, Rau M, Riese MJ, Rao S, Carlson KS, Routes JM, Verbsky JW, Thakar MS, Malarkannan S.
Nat Commun. 2019-09-02; 10 (1)
PMID: 31477722 DOI: 10.1038/s41467-019-11947-7
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Phenotypic responses of differentiated asthmatic human airway epithelial cultures to rhinovirus.
Bai J, Smock SL, Jackson GR, MacIsaac KD, Huang Y, Mankus C, Oldach J, Roberts B, Ma YL, Klappenbach JA, Crackower MA, Alves SE, Hayden PJ.
PLoS One. 2015-02-23; 10 (2)
PMID: 25706956 DOI: 10.1371/journal.pone.0118286
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Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution.
Aynaud MM, Mirabeau O, Gruel N, Grossetête S, Boeva V, Durand S, Surdez D, Saulnier O, Zaïdi S, Gribkova S, Fouché A, Kairov U, Raynal V, Tirode F, Grünewald TGP, Bohec M, Baulande S, Janoueix-Lerosey I, Vert JP, Barillot E, Delattre O, Zinovyev A.
Cell Rep. 2020-02-01; 30 (6)
PMID: 32049009 DOI: 10.1016/j.celrep.2020.01.049
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Super-Obese Patient-Derived iPSC Hypothalamic Neurons Exhibit Obesogenic Signatures and Hormone Responses.
Rajamani U, Gross AR, Hjelm BE, Sequeira A, Vawter MP, Tang J, Gangalapudi V, Wang Y, Andres AM, Gottlieb RA, Sareen D.
Cell Stem Cell. 2018-04-19; 22 (5)
PMID: 29681516 DOI: 10.1016/j.stem.2018.03.009
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Molecular signatures of multiple myeloma progression through single cell RNA-Seq.
Jang JS, Li Y, Mitra AK, Bi L, Abyzov A, van Wijnen AJ, Baughn LB, Van Ness B, Rajkumar V, Kumar S, Jen J.
Blood Cancer J. 2019-01-03; 9 (1)
PMID: 30607001 DOI: 10.1038/s41408-018-0160-x
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Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity.
Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ.
Nat Commun. 2019-08-21; 10 (1)
PMID: 31434901 DOI: 10.1038/s41467-019-11783-9
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Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells.
Golumbeanu M, Cristinelli S, Rato S, Munoz M, Cavassini M, Beerenwinkel N, Ciuffi A.
Cell Rep. 2018-04-01; 23 (4)
PMID: 29694901 DOI: 10.1016/j.celrep.2018.03.102
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Endothelialization of arterial vascular grafts by circulating monocytes.
Smith RJ, Nasiri B, Kann J, Yergeau D, Bard JE, Swartz DD, Andreadis ST.
Nat Commun. 2020-04-01; 11 (1)
PMID: 32238801 DOI: 10.1038/s41467-020-15361-2
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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.
Yan L, Yang M, Guo H, Yang L, Wu J, Li R, Liu P, Lian Y, Zheng X, Yan J, Huang J, Li M, Wu X, Wen L, Lao K, Li R, Qiao J, Tang F.
Nat Struct Mol Biol. 2013-08-11; 20 (9)
PMID: 23934149 DOI: 10.1038/nsmb.2660
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Natural mucosal barriers and COVID-19 in children.
Pierce CA, Sy S, Galen B, Goldstein DY, Orner E, Keller MJ, Herold KC, Herold BC.
JCI Insight. 2021-05-10; 6 (9)
PMID: 33822777 DOI: 10.1172/jci.insight.148694
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A specific low-density neutrophil population correlates with hypercoagulation and disease severity in hospitalized COVID-19 patients.
Morrissey SM, Geller AE, Hu X, Tieri D, Ding C, Klaes CK, Cooke EA, Woeste MR, Martin ZC, Chen O, Bush SE, Zhang HG, Cavallazzi R, Clifford SP, Chen J, Ghare S, Barve SS, Cai L, Kong M, Rouchka EC, McLeish KR, Uriarte SM, Watson CT, Huang J, Yan J.
JCI Insight. 2021-05-10; 6 (9)
PMID: 33986193 DOI: 10.1172/jci.insight.148435
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IL-21 drives expansion and plasma cell differentiation of autoreactive CD11chiT-bet+ B cells in SLE.
Wang S, Wang J, Kumar V, Karnell JL, Naiman B, Gross PS, Rahman S, Zerrouki K, Hanna R, Morehouse C, Holoweckyj N, Liu H, Autoimmunity Molecular Medicine Team, Manna Z, Goldbach-Mansky R, Hasni S, Siegel R, Sanjuan M, Streicher K, Cancro MP, Kolbeck R, Ettinger R.
Nat Commun. 2018-05-01; 9 (1)
PMID: 29717110 DOI: 10.1038/s41467-018-03750-7
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Cutaneous and systemic hyperinflammation drives maculopapular drug exanthema in severely ill COVID-19 patients.
Mitamura Y, Schulz D, Oro S, Li N, Kolm I, Lang C, Ziadlou R, Tan G, Bodenmiller B, Steiger P, Marzano A, de Prost N, Caudin O, Levesque M, Stoffel C, Schmid-Grendelmeier P, Maverakis E, Akdis CA, Brüggen MC.
Allergy. 2021-06-22;
PMID: 34157151 DOI: 10.1111/all.14983
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Persistent COVID-19 Symptoms Minimally Impact the Development of SARS-CoV-2-Specific T Cell Immunity.
Fang H, Wegman AD, Ripich K, Friberg H, Currier JR, Thomas SJ, Endy TP, Waickman AT.
Viruses. 2021-05-15; 13 (5)
PMID: 34063463 DOI: 10.3390/v13050916
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Interferon-regulated genetic programs and JAK/STAT pathway activate the intronic promoter of the short ACE2 isoform in renal proximal tubules.
Jankowski J, Lee HK, Wilflingseder J, Hennighausen L.
bioRxiv. 2021-01-19;
PMID: 33501441 DOI: 10.1101/2021.01.15.426908
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Single-cell analysis reveals congruence between kidney organoids and human fetal kidney.
Combes AN, Zappia L, Er PX, Oshlack A, Little MH.
Genome Med. 2019-01-23; 11 (1)
PMID: 30674341 DOI: 10.1186/s13073-019-0615-0
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Genome wide abnormal DNA methylome of human blastocyst in assisted reproductive technology.
Li G, Yu Y, Fan Y, Li C, Xu X, Duan J, Li R, Kang X, Ma X, Chen X, Ke Y, Yan J, Lian Y, Liu P, Zhao Y, Zhao H, Chen Y, Sun X, Liu J, Qiao J, Liu J.
J Genet Genomics. 2017-09-06; 44 (10)
PMID: 29037989 DOI: 10.1016/j.jgg.2017.09.001
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HSV-1 single-cell analysis reveals the activation of anti-viral and developmental programs in distinct sub-populations.
Drayman N, Patel P, Vistain L, Tay S.
Elife. 2019-05-15; 8
PMID: 31090537 DOI: 10.7554/elife.46339
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BRN2 suppresses apoptosis, reprograms DNA damage repair, and is associated with a high somatic mutation burden in melanoma.
Herbert K, Binet R, Lambert JP, Louphrasitthiphol P, Kalkavan H, Sesma-Sanz L, Robles-Espinoza CD, Sarkar S, Suer E, Andrews S, Chauhan J, Roberts ND, Middleton MR, Gingras AC, Masson JY, Larue L, Falletta P, Goding CR.
Genes Dev. 2019-02-25; 33 (5-6)
PMID: 30804224 DOI: 10.1101/gad.314633.118
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Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease.
Bouquet J, Soloski MJ, Swei A, Cheadle C, Federman S, Billaud JN, Rebman AW, Kabre B, Halpert R, Boorgula M, Aucott JN, Chiu CY.
mBio. 2016-02-12; 7 (1)
PMID: 26873097 DOI: 10.1128/mbio.00100-16
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RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.
Akula N, Barb J, Jiang X, Wendland JR, Choi KH, Sen SK, Hou L, Chen DT, Laje G, Johnson K, Lipska BK, Kleinman JE, Corrada-Bravo H, Detera-Wadleigh S, Munson PJ, McMahon FJ.
Mol Psychiatry. 2014-01-07; 19 (11)
PMID: 24393808 DOI: 10.1038/mp.2013.170
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The K666N mutation in SF3B1 is associated with increased progression of MDS and distinct RNA splicing.
Dalton WB, Helmenstine E, Pieterse L, Li B, Gocke CD, Donaldson J, Xiao Z, Gondek LP, Ghiaur G, Gojo I, Smith BD, Levis MJ, DeZern AE.
Blood Adv. 2020-04-01; 4 (7)
PMID: 32211880 DOI: 10.1182/bloodadvances.2019001127
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CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death.
Lévy Y, Wiedemann A, Hejblum BP, Durand M, Lefebvre C, Surénaud M, Lacabaratz C, Perreau M, Foucat E, Déchenaud M, Tisserand P, Blengio F, Hivert B, Gauthier M, Cervantes-Gonzalez M, Bachelet D, Laouénan C, Bouadma L, Timsit JF, Yazdanpanah Y, Pantaleo G, Hocini H, Thiébaut R, French COVID cohort study group.
iScience. 2021-06-10; 24 (7)
PMID: 34127958 DOI: 10.1016/j.isci.2021.102711
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Pain-Associated Transcriptome Changes in Synovium of Knee Osteoarthritis Patients.
Bratus-Neuenschwander A, Castro-Giner F, Frank-Bertoncelj M, Aluri S, Fucentese SF, Schlapbach R, Sprott H.
Genes (Basel). 2018-07-04; 9 (7)
PMID: 29973527 DOI: 10.3390/genes9070338
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Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19.
Bernardes JP, Mishra N, Tran F, Bahmer T, Best L, Blase JI, Bordoni D, Franzenburg J, Geisen U, Josephs-Spaulding J, Köhler P, Künstner A, Rosati E, Aschenbrenner AC, Bacher P, Baran N, Boysen T, Brandt B, Bruse N, Dörr J, Dräger A, Elke G, Ellinghaus D, Fischer J, Forster M, Franke A, Franzenburg S, Frey N, Friedrichs A, Fuß J, Glück A, Hamm J, Hinrichsen F, Hoeppner MP, Imm S, Junker R, Kaiser S, Kan YH, Knoll R, Lange C, Laue G, Lier C, Lindner M, Marinos G, Markewitz R, Nattermann J, Noth R, Pickkers P, Rabe KF, Renz A, Röcken C, Rupp J, Schaffarzyk A, Scheffold A, Schulte-Schrepping J, Schunk D, Skowasch D, Ulas T, Wandinger KP, Wittig M, Zimmermann J, Busch H, Hoyer BF, Kaleta C, Heyckendorf J, Kox M, Rybniker J, Schreiber S, Schultze JL, Rosenstiel P, HCA Lung Biological Network, Deutsche COVID-19 Omics Initiative (DeCOI).
Immunity. 2020-11-26; 53 (6)
PMID: 33296687 DOI: 10.1016/j.immuni.2020.11.017
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The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty.
Guo J, Nie X, Giebler M, Mlcochova H, Wang Y, Grow EJ, DonorConnect, Kim R, Tharmalingam M, Matilionyte G, Lindskog C, Carrell DT, Mitchell RT, Goriely A, Hotaling JM, Cairns BR.
Cell Stem Cell. 2020-01-09; 26 (2)
PMID: 31928944 DOI: 10.1016/j.stem.2019.12.005
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A Systems Analysis of the Relationships Between Anemia and Ischemic Stroke Rehabilitation Based on RNA-Seq Data.
Wang Y, Huang X, Liu J, Zhao X, Yu H, Cai Y.
Front Genet. 2019-05-24; 10
PMID: 31178893 DOI: 10.3389/fgene.2019.00456
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Identification of conserved SARS-CoV-2 spike epitopes that expand public cTfh clonotypes in mild COVID-19 patients.
Lu X, Hosono Y, Nagae M, Ishizuka S, Ishikawa E, Motooka D, Ozaki Y, Sax N, Maeda Y, Kato Y, Morita T, Shinnakasu R, Inoue T, Onodera T, Matsumura T, Shinkai M, Sato T, Nakamura S, Mori S, Kanda T, Nakayama EE, Shioda T, Kurosaki T, Takeda K, Kumanogoh A, Arase H, Nakagami H, Yamashita K, Takahashi Y, Yamasaki S.
J Exp Med. 2021-10-14; 218 (12)
PMID: 34647971 DOI: 10.1084/jem.20211327
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Memory CD4+ T cells are generated in the human fetal intestine.
Li N, van Unen V, Abdelaal T, Guo N, Kasatskaya SA, Ladell K, McLaren JE, Egorov ES, Izraelson M, Chuva de Sousa Lopes SM, Höllt T, Britanova OV, Eggermont J, de Miranda NFCC, Chudakov DM, Price DA, Lelieveldt BPF, Koning F.
Nat Immunol. 2019-01-21; 20 (3)
PMID: 30664737 DOI: 10.1038/s41590-018-0294-9
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Modeling SARS-CoV-2 infection and its individual differences with ACE2-expressing human iPS cells.
Sano E, Deguchi S, Sakamoto A, Mimura N, Hirabayashi A, Muramoto Y, Noda T, Yamamoto T, Takayama K.
iScience. 2021-04-16; 24 (5)
PMID: 33880436 DOI: 10.1016/j.isci.2021.102428
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Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis.
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