Gene Expression
Nebulas
Gene Expression Nebulas| Download | Dataset ID | BioProject ID | Project ID | Dataset Name | Species | Strategy | Sample Number | Tissue | Cell Type | Cell Line | Healthy Condition | Development Stage | Case Detail | Control Detail | Cell Number | Biological Condition | Quality and Quantity | |||||||||
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| Baseline | Genetic | Phenotypic | Environmental | Spatial | Temporal | RNA Type | Median Mapping Quality | Median Coverage | Max Sequencing Length | Max Replicate# | ||||||||||||||||
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IL-21 drives expansion and plasma cell differentiation of autoreactive CD11chiT-bet+ B cells in SLE.
Wang S, Wang J, Kumar V, Karnell JL, Naiman B, Gross PS, Rahman S, Zerrouki K, Hanna R, Morehouse C, Holoweckyj N, Liu H, Autoimmunity Molecular Medicine Team, Manna Z, Goldbach-Mansky R, Hasni S, Siegel R, Sanjuan M, Streicher K, Cancro MP, Kolbeck R, Ettinger R.
Nat Commun. 2018-05-01; 9 (1)
PMID: 29717110 DOI: 10.1038/s41467-018-03750-7
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Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.
Kim KT, Lee HW, Lee HO, Kim SC, Seo YJ, Chung W, Eum HH, Nam DH, Kim J, Joo KM, Park WY.
Genome Biol. 2015-06-19; 16
PMID: 26084335 DOI: 10.1186/s13059-015-0692-3
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Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns.
Enge M, Arda HE, Mignardi M, Beausang J, Bottino R, Kim SK, Quake SR.
Cell. 2017-09-28; 171 (2)
PMID: 28965763 DOI: 10.1016/j.cell.2017.09.004
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Copy number loss of the interferon gene cluster in melanomas is linked to reduced T cell infiltrate and poor patient prognosis.
Linsley PS, Speake C, Whalen E, Chaussabel D.
PLoS One. 2014-10-14; 9 (10)
PMID: 25314013 DOI: 10.1371/journal.pone.0109760
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Atopic Dermatitis Is an IL-13-Dominant Disease with Greater Molecular Heterogeneity Compared to Psoriasis.
Tsoi LC, Rodriguez E, Degenhardt F, Baurecht H, Wehkamp U, Volks N, Szymczak S, Swindell WR, Sarkar MK, Raja K, Shao S, Patrick M, Gao Y, Uppala R, Perez White BE, Getsios S, Harms PW, Maverakis E, Elder JT, Franke A, Gudjonsson JE, Weidinger S.
J Invest Dermatol. 2019-01-11; 139 (7)
PMID: 30641038 DOI: 10.1016/j.jid.2018.12.018
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Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma.
Kim KT, Lee HW, Lee HO, Song HJ, Jeong da E, Shin S, Kim H, Shin Y, Nam DH, Jeong BC, Kirsch DG, Joo KM, Park WY.
Genome Biol. 2016-04-29; 17
PMID: 27139883 DOI: 10.1186/s13059-016-0945-9
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Batch effects and the effective design of single-cell gene expression studies.
Tung PY, Blischak JD, Hsiao CJ, Knowles DA, Burnett JE, Pritchard JK, Gilad Y.
Sci Rep. 2017-01-03; 7
PMID: 28045081 DOI: 10.1038/srep39921
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CD40L-Dependent Pathway Is Active at Various Stages of Rheumatoid Arthritis Disease Progression.
Guo Y, Walsh AM, Fearon U, Smith MD, Wechalekar MD, Yin X, Cole S, Orr C, McGarry T, Canavan M, Kelly S, Lin TA, Liu X, Proudman SM, Veale DJ, Pitzalis C, Nagpal S.
J Immunol. 2017-04-28; 198 (11)
PMID: 28455435 DOI: 10.4049/jimmunol.1601988
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Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions.
Li L, Dong J, Yan L, Yong J, Liu X, Hu Y, Fan X, Wu X, Guo H, Wang X, Zhu X, Li R, Yan J, Wei Y, Zhao Y, Wang W, Ren Y, Yuan P, Yan Z, Hu B, Guo F, Wen L, Tang F, Qiao J.
Cell Stem Cell. 2017-04-27; 20 (6)
PMID: 28457750 DOI: 10.1016/j.stem.2017.03.007
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Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Menon M, Mohammadi S, Davila-Velderrain J, Goods BA, Cadwell TD, Xing Y, Stemmer-Rachamimov A, Shalek AK, Love JC, Kellis M, Hafler BP.
Nat Commun. 2019-10-25; 10 (1)
PMID: 31653841 DOI: 10.1038/s41467-019-12780-8
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Genetic and transcriptional evolution alters cancer cell line drug response.
Ben-David U, Siranosian B, Ha G, Tang H, Oren Y, Hinohara K, Strathdee CA, Dempster J, Lyons NJ, Burns R, Nag A, Kugener G, Cimini B, Tsvetkov P, Maruvka YE, O'Rourke R, Garrity A, Tubelli AA, Bandopadhayay P, Tsherniak A, Vazquez F, Wong B, Birger C, Ghandi M, Thorner AR, Bittker JA, Meyerson M, Getz G, Beroukhim R, Golub TR.
Nature. 2018-08-08; 560 (7718)
PMID: 30089904 DOI: 10.1038/s41586-018-0409-3
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The effects of restricted glycolysis on stem-cell like characteristics of breast cancer cells.
Banerjee A, Arvinrad P, Darley M, Laversin SA, Parker R, Rose-Zerilli MJJ, Townsend PA, Cutress RI, Beers SA, Houghton FD, Birts CN, Blaydes JP.
Oncotarget. 2018-05-01; 9 (33)
PMID: 29796188 DOI: 10.18632/oncotarget.25299
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Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome.
Yang C, Siebert JR, Burns R, Gerbec ZJ, Bonacci B, Rymaszewski A, Rau M, Riese MJ, Rao S, Carlson KS, Routes JM, Verbsky JW, Thakar MS, Malarkannan S.
Nat Commun. 2019-09-02; 10 (1)
PMID: 31477722 DOI: 10.1038/s41467-019-11947-7
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Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men.
Samuel RM, Majd H, Richter MN, Ghazizadeh Z, Zekavat SM, Navickas A, Ramirez JT, Asgharian H, Simoneau CR, Bonser LR, Koh KD, Garcia-Knight M, Tassetto M, Sunshine S, Farahvashi S, Kalantari A, Liu W, Andino R, Zhao H, Natarajan P, Erle DJ, Ott M, Goodarzi H, Fattahi F.
Cell Stem Cell. 2020-11-17; 27 (6)
PMID: 33232663 DOI: 10.1016/j.stem.2020.11.009
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Alterations in the Transcriptional Programs of Myeloma Cells and the Microenvironment during Extramedullary Progression Affect Proliferation and Immune Evasion.
Ryu D, Kim SJ, Hong Y, Jo A, Kim N, Kim HJ, Lee HO, Kim K, Park WY.
Clin Cancer Res. 2019-09-26; 26 (4)
PMID: 31558476 DOI: 10.1158/1078-0432.ccr-19-0694
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Haematopoietic stem and progenitor cells from human pluripotent stem cells.
Sugimura R, Jha DK, Han A, Soria-Valles C, da Rocha EL, Lu YF, Goettel JA, Serrao E, Rowe RG, Malleshaiah M, Wong I, Sousa P, Zhu TN, Ditadi A, Keller G, Engelman AN, Snapper SB, Doulatov S, Daley GQ.
Nature. 2017-05-17; 545 (7655)
PMID: 28514439 DOI: 10.1038/nature22370
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Molecular Analysis of the Kidney From a Patient With COVID-19-Associated Collapsing Glomerulopathy.
Meliambro K, Li X, Salem F, Yi Z, Sun Z, Chan L, Chung M, Chancay J, Vy HMT, Nadkarni G, Wong JS, Fu J, Lee K, Zhang W, He JC, Campbell KN.
Kidney Med. 2021-04-28; 3 (4)
PMID: 33942030 DOI: 10.1016/j.xkme.2021.02.012
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Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia.
Schuurman AR, Reijnders TDY, Saris A, Ramirez Moral I, Schinkel M, de Brabander J, van Linge C, Vermeulen L, Scicluna BP, Wiersinga WJ, Vieira Braga FA, van der Poll T.
Elife. 2021-08-23; 10
PMID: 34424199 DOI: 10.7554/elife.69661
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Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Xi Y, Kim T, Brumwell AN, Driver IH, Wei Y, Tan V, Jackson JR, Xu J, Lee DK, Gotts JE, Matthay MA, Shannon JM, Chapman HA, Vaughan AE.
Nat Cell Biol. 2017-07-24; 19 (8)
PMID: 28737769 DOI: 10.1038/ncb3580
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Fixed single-cell transcriptomic characterization of human radial glial diversity.
Thomsen ER, Mich JK, Yao Z, Hodge RD, Doyle AM, Jang S, Shehata SI, Nelson AM, Shapovalova NV, Levi BP, Ramanathan S.
Nat Methods. 2015-11-16; 13 (1)
PMID: 26524239 DOI: 10.1038/nmeth.3629
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Interferon-regulated genetic programs and JAK/STAT pathway activate the intronic promoter of the short ACE2 isoform in renal proximal tubules.
Jankowski J, Lee HK, Wilflingseder J, Hennighausen L.
bioRxiv. 2021-01-19;
PMID: 33501441 DOI: 10.1101/2021.01.15.426908
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Adult Stem Cell-derived Complete Lung Organoid Models Emulate Lung Disease in COVID-19.
Tindle C, Fuller M, Fonseca A, Taheri S, Ibeawuchi SR, Beutler N, Katkar G, Claire A, Castillo V, Hernandez M, Russo H, Duran J, Crotty Alexander LE, Tipps A, Lin G, Thistlethwaite PA, Chattopadhyay R, Rogers TF, Sahoo D, Ghosh P, Das S.
bioRxiv. 2021-05-05;
PMID: 33106807 DOI: 10.1101/2020.10.17.344002
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Single-Cell RNA Sequencing of Urinary Cells Reveals Distinct Cellular Diversity in COVID-19-Associated AKI.
Cheung MD, Erman EN, Liu S, Erdmann NB, Ghajar-Rahimi G, Moore KH, Edberg JC, George JF, Agarwal A.
Kidney360. 2021-11-05; 3 (1)
PMID: 35368565 DOI: 10.34067/kid.0005522021
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Identification of Candidate COVID-19 Therapeutics using hPSC-derived Lung Organoids.
Han Y, Yang L, Duan X, Duan F, Nilsson-Payant BE, Yaron TM, Wang P, Tang X, Zhang T, Zhao Z, Bram Y, Redmond D, Houghton S, Nguyen D, Xu D, Wang X, Uhl S, Huang Y, Johnson JL, Xiang J, Wang H, Pan FC, Cantley LC, tenOever BR, Ho DD, Evans T, Schwartz RE, Chen HJ, Chen S.
bioRxiv. 2020-05-05;
PMID: 32511403 DOI: 10.1101/2020.05.05.079095
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Platelets amplify endotheliopathy in COVID-19.
Barrett TJ, Cornwell M, Myndzar K, Rolling CC, Xia Y, Drenkova K, Biebuyck A, Fields AT, Tawil M, Luttrell-Williams E, Yuriditsky E, Smith G, Cotzia P, Neal MD, Kornblith LZ, Pittaluga S, Rapkiewicz AV, Burgess HM, Mohr I, Stapleford KA, Voora D, Ruggles K, Hochman J, Berger JS.
Sci Adv. 2021-09-08; 7 (37)
PMID: 34516880 DOI: 10.1126/sciadv.abh2434
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Differing molecular response of young and advanced maternal age human oocytes to IVM.
Reyes JM, Silva E, Chitwood JL, Schoolcraft WB, Krisher RL, Ross PJ.
Hum Reprod. 2017-11-01; 32 (11)
PMID: 29025019 DOI: 10.1093/humrep/dex284
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Macosko EZ, Basu A, Satija R, Nemesh J, Shekhar K, Goldman M, Tirosh I, Bialas AR, Kamitaki N, Martersteck EM, Trombetta JJ, Weitz DA, Sanes JR, Shalek AK, Regev A, McCarroll SA.
Cell. 2015-05-01; 161 (5)
PMID: 26000488 DOI: 10.1016/j.cell.2015.05.002
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Controlled modelling of human epiblast and amnion development using stem cells.
Zheng Y, Xue X, Shao Y, Wang S, Esfahani SN, Li Z, Muncie JM, Lakins JN, Weaver VM, Gumucio DL, Fu J.
Nature. 2019-09-11; 573 (7774)
PMID: 31511693 DOI: 10.1038/s41586-019-1535-2
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Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.
Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW.
Mol Cell. 2017-06-29; 67 (1)
PMID: 28673540 DOI: 10.1016/j.molcel.2017.06.003
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Platelets contribute to disease severity in COVID-19.
Barrett TJ, Bilaloglu S, Cornwell M, Burgess HM, Virginio VW, Drenkova K, Ibrahim H, Yuriditsky E, Aphinyanaphongs Y, Lifshitz M, Xia Liang F, Alejo J, Smith G, Pittaluga S, Rapkiewicz AV, Wang J, Iancu-Rubin C, Mohr I, Ruggles K, Stapleford KA, Hochman J, Berger JS.
J Thromb Haemost. 2021-09-29; 19 (12)
PMID: 34538015 DOI: 10.1111/jth.15534
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Integrated Multi-omic Analysis of Esthesioneuroblastomas Identifies Two Subgroups Linked to Cell Ontogeny.
Classe M, Yao H, Mouawad R, Creighton CJ, Burgess A, Allanic F, Wassef M, Leroy X, Verillaud B, Mortuaire G, Bielle F, Le Tourneau C, Kurtz JE, Khayat D, Su X, Malouf GG.
Cell Rep. 2018-10-01; 25 (3)
PMID: 30332658 DOI: 10.1016/j.celrep.2018.09.047
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Convalescent COVID-19 Patients Without Comorbidities Display Similar Immunophenotypes Over Time Despite Divergent Disease Severities.
Chu CF, Sabath F, Fibi-Smetana S, Sun S, Öllinger R, Noeßner E, Chao YY, Rinke L, Winheim E, Rad R, Krug AB, Taher L, Zielinski CE.
Front Immunol. 2021-08-19; 12
PMID: 34867933 DOI: 10.3389/fimmu.2021.601080
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Modeling SARS-CoV-2 infection and its individual differences with ACE2-expressing human iPS cells.
Sano E, Deguchi S, Sakamoto A, Mimura N, Hirabayashi A, Muramoto Y, Noda T, Yamamoto T, Takayama K.
iScience. 2021-04-16; 24 (5)
PMID: 33880436 DOI: 10.1016/j.isci.2021.102428
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Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface.
Lu-Culligan A, Chavan AR, Vijayakumar P, Irshaid L, Courchaine EM, Milano KM, Tang Z, Pope SD, Song E, Vogels CBF, Lu-Culligan WJ, Campbell KH, Casanovas-Massana A, Bermejo S, Toothaker JM, Lee HJ, Liu F, Schulz W, Fournier J, Muenker MC, Moore AJ, Yale IMPACT Team, Konnikova L, Neugebauer KM, Ring A, Grubaugh ND, Ko AI, Morotti R, Guller S, Kliman HJ, Iwasaki A, Farhadian SF.
Med (N Y). 2021-04-30; 2 (5)
PMID: 33969332 DOI: 10.1016/j.medj.2021.04.016
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The NF-κB Transcriptional Footprint Is Essential for SARS-CoV-2 Replication.
Nilsson-Payant BE, Uhl S, Grimont A, Doane AS, Cohen P, Patel RS, Higgins CA, Acklin JA, Bram Y, Chandar V, Blanco-Melo D, Panis M, Lim JK, Elemento O, Schwartz RE, Rosenberg BR, Chandwani R, tenOever BR.
J Virol. 2021-09-15; 95 (23)
PMID: 34523966 DOI: 10.1128/jvi.01257-21
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Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing.
Smith SL, Kennedy PR, Stacey KB, Worboys JD, Yarwood A, Seo S, Solloa EH, Mistretta B, Chatterjee SS, Gunaratne P, Allette K, Wang YC, Smith ML, Sebra R, Mace EM, Horowitz A, Thomson W, Martin P, Eyre S, Davis DM.
Blood Adv. 2020-04-01; 4 (7)
PMID: 32271902 DOI: 10.1182/bloodadvances.2019000699
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Risk variants disrupting enhancers of TH1 and TREG cells in type 1 diabetes.
Gao P, Uzun Y, He B, Salamati SE, Coffey JKM, Tsalikian E, Tan K.
Proc Natl Acad Sci U S A. 2019-03-25; 116 (15)
PMID: 30910956 DOI: 10.1073/pnas.1815336116
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Prosurvival kinase PIM2 is a therapeutic target for eradication of chronic myeloid leukemia stem cells.
Ma L, Pak ML, Ou J, Yu J, St Louis P, Shan Y, Hutchinson L, Li S, Brehm MA, Zhu LJ, Green MR.
Proc Natl Acad Sci U S A. 2019-05-08; 116 (21)
PMID: 31068472 DOI: 10.1073/pnas.1903550116
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Cellular senescence mediates fibrotic pulmonary disease.
Schafer MJ, White TA, Iijima K, Haak AJ, Ligresti G, Atkinson EJ, Oberg AL, Birch J, Salmonowicz H, Zhu Y, Mazula DL, Brooks RW, Fuhrmann-Stroissnigg H, Pirtskhalava T, Prakash YS, Tchkonia T, Robbins PD, Aubry MC, Passos JF, Kirkland JL, Tschumperlin DJ, Kita H, LeBrasseur NK.
Nat Commun. 2017-02-23; 8
PMID: 28230051 DOI: 10.1038/ncomms14532
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Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface.
Pavličev M, Wagner GP, Chavan AR, Owens K, Maziarz J, Dunn-Fletcher C, Kallapur SG, Muglia L, Jones H.
Genome Res. 2017-02-07; 27 (3)
PMID: 28174237 DOI: 10.1101/gr.207597.116
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Aryl Hydrocarbon Receptor Controls Monocyte Differentiation into Dendritic Cells versus Macrophages.
Goudot C, Coillard A, Villani AC, Gueguen P, Cros A, Sarkizova S, Tang-Huau TL, Bohec M, Baulande S, Hacohen N, Amigorena S, Segura E.
Immunity. 2017-09-01; 47 (3)
PMID: 28930664 DOI: 10.1016/j.immuni.2017.08.016
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Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.
Ouchi R, Togo S, Kimura M, Shinozawa T, Koido M, Koike H, Thompson W, Karns RA, Mayhew CN, McGrath PS, McCauley HA, Zhang RR, Lewis K, Hakozaki S, Ferguson A, Saiki N, Yoneyama Y, Takeuchi I, Mabuchi Y, Akazawa C, Yoshikawa HY, Wells JM, Takebe T.
Cell Metab. 2019-05-30; 30 (2)
PMID: 31155493 DOI: 10.1016/j.cmet.2019.05.007
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Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells.
Zhao Y, Carter R, Natarajan S, Varn FS, Compton DA, Gawad C, Cheng C, Godek KM.
BMC Med Genomics. 2019-05-31; 12 (1)
PMID: 31151460 DOI: 10.1186/s12920-019-0532-5
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Androgen signaling uses a writer and a reader of ADP-ribosylation to regulate protein complex assembly.
Yang CS, Jividen K, Kamata T, Dworak N, Oostdyk L, Remlein B, Pourfarjam Y, Kim IK, Du KP, Abbas T, Sherman NE, Wotton D, Paschal BM.
Nat Commun. 2021-05-11; 12 (1)
PMID: 33976187 DOI: 10.1038/s41467-021-23055-6
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Triple DMARD treatment in early rheumatoid arthritis modulates synovial T cell activation and plasmablast/plasma cell differentiation pathways.
Walsh AM, Wechalekar MD, Guo Y, Yin X, Weedon H, Proudman SM, Smith MD, Nagpal S.
PLoS One. 2017-09-01; 12 (9)
PMID: 28863153 DOI: 10.1371/journal.pone.0183928
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Comparative single-cell RNA sequencing (scRNA-seq) reveals liver metastasis-specific targets in a patient with small intestinal neuroendocrine cancer.
Rao M, Oh K, Moffitt R, Thompson P, Li J, Liu J, Sasson A, Georgakis G, Kim J, Choi M, Powers S.
Cold Spring Harb Mol Case Stud. 2020-04-01; 6 (2)
PMID: 32054662 DOI: 10.1101/mcs.a004978
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Pseudotime Dynamics in Melanoma Single-Cell Transcriptomes Reveals Different Mechanisms of Tumor Progression.
Loeffler-Wirth H, Binder H, Willscher E, Gerber T, Kunz M.
Biology (Basel). 2018-04-03; 7 (2)
PMID: 29614062 DOI: 10.3390/biology7020023
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Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development.
Hochane M, van den Berg PR, Fan X, Bérenger-Currias N, Adegeest E, Bialecka M, Nieveen M, Menschaart M, Chuva de Sousa Lopes SM, Semrau S.
PLoS Biol. 2019-02-21; 17 (2)
PMID: 30789893 DOI: 10.1371/journal.pbio.3000152
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Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort.
Shannon CP, Blimkie TM, Ben-Othman R, Gladish N, Amenyogbe N, Drissler S, Edgar RD, Chan Q, Krajden M, Foster LJ, Kobor MS, Mohn WW, Brinkman RR, Le Cao KA, Scheuermann RH, Tebbutt SJ, Hancock REW, Koff WC, Kollmann TR, Sadarangani M, Lee AH.
Front Immunol. 2020-11-30; 11
PMID: 33329547 DOI: 10.3389/fimmu.2020.578801
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Single-Cell RNA-seq Reveals a Subpopulation of Prostate Cancer Cells with Enhanced Cell-Cycle-Related Transcription and Attenuated Androgen Response.
Horning AM, Wang Y, Lin CK, Louie AD, Jadhav RR, Hung CN, Wang CM, Lin CL, Kirma NB, Liss MA, Kumar AP, Sun L, Liu Z, Chao WT, Wang Q, Jin VX, Chen CL, Huang TH.
Cancer Res. 2017-12-12; 78 (4)
PMID: 29233929 DOI: 10.1158/0008-5472.can-17-1924
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HSV-1 single-cell analysis reveals the activation of anti-viral and developmental programs in distinct sub-populations.
Drayman N, Patel P, Vistain L, Tay S.
Elife. 2019-05-15; 8
PMID: 31090537 DOI: 10.7554/elife.46339
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Changes in macrophage transcriptome associate with systemic sclerosis and mediate GSDMA contribution to disease risk.
Moreno-Moral A, Bagnati M, Koturan S, Ko JH, Fonseca C, Harmston N, Game L, Martin J, Ong V, Abraham DJ, Denton CP, Behmoaras J, Petretto E.
Ann Rheum Dis. 2018-01-17; 77 (4)
PMID: 29348297 DOI: 10.1136/annrheumdis-2017-212454
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An Immuno-Cardiac Model for Macrophage-Mediated Inflammation in COVID-19 Hearts.
Yang L, Han Y, Jaffré F, Nilsson-Payant BE, Bram Y, Wang P, Zhu J, Zhang T, Redmond D, Houghton S, Uhl S, Borczuk A, Huang Y, Richardson C, Chandar V, Acklin JA, Lim JK, Chen Z, Xiang J, Ho DD, tenOever BR, Schwartz RE, Evans T, Chen S.
Circ Res. 2021-04-15; 129 (1)
PMID: 33853355 DOI: 10.1161/circresaha.121.319060
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Identification of RUNX1 as a Mediator of Aberrant Retinal Angiogenesis.
Lam JD, Oh DJ, Wong LL, Amarnani D, Park-Windhol C, Sanchez AV, Cardona-Velez J, McGuone D, Stemmer-Rachamimov AO, Eliott D, Bielenberg DR, van Zyl T, Shen L, Gai X, D'Amore PA, Kim LA, Arboleda-Velasquez JF.
Diabetes. 2017-04-11; 66 (7)
PMID: 28400392 DOI: 10.2337/db16-1035
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Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes M, Lyko F.
Commun Biol. 2020-04-23; 3 (1)
PMID: 32327715 DOI: 10.1038/s42003-020-0922-4
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A radiogenomic dataset of non-small cell lung cancer.
Bakr S, Gevaert O, Echegaray S, Ayers K, Zhou M, Shafiq M, Zheng H, Benson JA, Zhang W, Leung ANC, Kadoch M, Hoang CD, Shrager J, Quon A, Rubin DL, Plevritis SK, Napel S.
Sci Data. 2018-10-16; 5
PMID: 30325352 DOI: 10.1038/sdata.2018.202
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Adaptive from Innate: Human IFN-γ+CD4+ T Cells Can Arise Directly from CXCL8-Producing Recent Thymic Emigrants in Babies and Adults.
Das A, Rouault-Pierre K, Kamdar S, Gomez-Tourino I, Wood K, Donaldson I, Mein CA, Bonnet D, Hayday AC, Gibbons DL.
J Immunol. 2017-07-28; 199 (5)
PMID: 28754679 DOI: 10.4049/jimmunol.1700551
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Maturation signatures of conventional dendritic cell subtypes in COVID-19 suggest direct viral sensing.
Marongiu L, Protti G, Facchini FA, Valache M, Mingozzi F, Ranzani V, Putignano AR, Salviati L, Bevilacqua V, Curti S, Crosti M, Sarnicola ML, D'Angiò M, Bettini LR, Biondi A, Nespoli L, Tamini N, Clementi N, Mancini N, Abrignani S, Spreafico R, Granucci F.
Eur J Immunol. 2021-10-01; 52 (1)
PMID: 34333764 DOI: 10.1002/eji.202149298
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COX-2 mediates tumor-stromal prolactin signaling to initiate tumorigenesis.
Zheng Y, Comaills V, Burr R, Boulay G, Miyamoto DT, Wittner BS, Emmons E, Sil S, Koulopoulos MW, Broderick KT, Tai E, Rengarajan S, Kulkarni AS, Shioda T, Wu CL, Ramaswamy S, Ting DT, Toner M, Rivera MN, Maheswaran S, Haber DA.
Proc Natl Acad Sci U S A. 2019-02-28; 116 (12)
PMID: 30819896 DOI: 10.1073/pnas.1819303116
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Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer.
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