| 实验编号 | CRX008024 |
| 物种名称 | Mus musculus cytomegalovirus 2 |
| 标题 | 2-cell Control RNA-seq |
| 项目编号 | PRJCA000241 |
| 样本编号 | SAMC007621 |
| 测序平台 | Illumina HiSeq 4000 |
| 建库信息 |
| 文库名称 |
文库构建方法 |
建库策略 |
样品来源 |
实验选择 |
文库布局 |
|
the RNA-seq data were mapped to the mm10 genome by STAR (version 2.5.2b) (Dobin et al., 2013)with default parameters. Then the gene expression FPKM was calculated by Cuffinks (version 2.2.1) using the refFat database from the UCSC genome browser. The track is sequencing depth normalized and generated at 10bp window. Maternal and Paternal gene expression is based on assigned reads from SNP tracking method to distinguish maternal or paternal origin. |
WGA |
TRANSCRIPTOMIC |
PolyA |
PAIRED
|
|
| 处理信息 |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
|
| 发布日期 | 2017-07-13 |
|---|
| 测序反应 |
| Run编号 |
Run序列文件信息 |
| File name | File size (MB) |
|---|
| CRR008799 |
CRD018520
CRD018521
|
1,091.14
1,214.6
|
| CRR008800 |
CRD018522
CRD018523
|
1,128.57
1,290.26
|
|
| 提交者 | Xuepeng Chen (chenxp@big.ac.cn) |
|---|
| 所属单位 | Beijing Institute of Genomics, Chinese Academy of Sciences |
|---|
| 提交日期 | 2016-11-28 |
|---|
