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CRA002522 Information
Title: CovProfile: profiling the viral genome and gene expressions of SARS-COV2
BioProject: PRJCA002503 /
Release date: 2021-09-26
Files: 54
File size: 4.79 GB
Publication
Article title
Longitudinal virological changes and underlying pathogenesis in hospitalized COVID-19 patients in Guangzhou, China
Journal name
Science China Life Sciences
Year
2021
DOI
10.1007/s11427-020-1921-5
PubMed ID
33945070

Article title
Both simulation and sequencing data reveal coinfections with multiple SARS-CoV-2 variants in the COVID-19 pandemic
Journal name
Computational and Structural Biotechnology Journal
Year
2022
DOI
10.1016/j.csbj.2022.03.011
PubMed ID
35342534

Dataset Downlaod
MetaData:
CRA002522.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa/CRA002522
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FTP：ftp://download.big.ac.cn/gsa/CRA002522

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX278782 nCov-Y-2 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460092
Run accession Run alias Run data file information
CRR325961 nCov-Y-2 File: CRR325961.fastq.gz
CRX278781 nCoV-9 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460091
Run accession Run alias Run data file information
CRR325960 nCoV-9 File: CRR325960.fastq.gz
CRX278780 nCoV-8 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460090
Run accession Run alias Run data file information
CRR325959 nCoV-8 File: CRR325959.fastq.gz
CRX278779 nCoV-7 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460089
Run accession Run alias Run data file information
CRR325958 nCoV-7 File: CRR325958.fastq.gz
CRX278778 nCoV-6 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460088
Run accession Run alias Run data file information
CRR325957 nCoV-6 File: CRR325957.fastq.gz
CRX278777 nCoV-4 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460087
Run accession Run alias Run data file information
CRR325956 nCoV-4 File: CRR325956.fastq.gz
CRX278776 nCoV-3 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460086
Run accession Run alias Run data file information
CRR325955 nCoV-3 File: CRR325955.fastq.gz
CRX278775 nCoV-20 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460085
Run accession Run alias Run data file information
CRR325954 nCoV-20 File: CRR325954.fastq.gz
CRX278774 nCoV-19 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460084
Run accession Run alias Run data file information
CRR325953 nCoV-19 File: CRR325953.fastq.gz
CRX278773 nCoV-18 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460083
Run accession Run alias Run data file information
CRR325952 nCoV-18 File: CRR325952.fastq.gz
CRX278772 nCoV-17 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460082
Run accession Run alias Run data file information
CRR325951 nCoV-17 File: CRR325951.fastq.gz
CRX278771 nCoV-16 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460081
Run accession Run alias Run data file information
CRR325950 nCoV-16 File: CRR325950.fastq.gz
CRX278770 nCoV-15 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460080
Run accession Run alias Run data file information
CRR325949 nCoV-15 File: CRR325949.fastq.gz
CRX278769 nCoV-14 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460079
Run accession Run alias Run data file information
CRR325948 nCoV-14 File: CRR325948.fastq.gz
CRX278768 nCoV-13 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460078
Run accession Run alias Run data file information
CRR325947 nCoV-13 File: CRR325947.fastq.gz
CRX278767 nCoV-12 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460077
Run accession Run alias Run data file information
CRR325946 nCoV-12 File: CRR325946.fastq.gz
CRX278766 nCoV-11 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460076
Run accession Run alias Run data file information
CRR325945 nCoV-11 File: CRR325945.fastq.gz
CRX278765 nCoV-10 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460075
Run accession Run alias Run data file information
CRR325944 nCoV-10 File: CRR325944.fastq.gz
CRX278764 G47_0325 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460074
Run accession Run alias Run data file information
CRR325943 G47_0325 File: CRR325943.fastq.gz
CRX278763 G46_0325 Severe acute respiratory syndrome coronavirus 2 OXFORD_NANOPORE MinION SAMC460073
Run accession Run alias Run data file information
CRR325942 G46_0325 File: CRR325942.fastq.gz
Submitter:Yonghan Yu (ahfyyyh@outlook.com)
Organization:City University of Hong Kong
Date submitted:2020-04-08