| 实验编号 | CRX117289 |
| 物种名称 | Scylla paramamosain |
| 标题 | Sequencing the transcriptome of Thoracic and cerebral ganglion tissues from three female adult crabs |
| 项目编号 | PRJCA001790 |
| 样本编号 | SAMC191307 |
| 测序平台 | Illumina HiSeq 2500 |
| 建库信息 |
| 文库名称 |
文库构建方法 |
建库策略 |
样品来源 |
实验选择 |
文库布局 |
|
RNA-seq transcriptome library was prepared following TruSeqTM RNA sample preparation Kit from Illumina using 5μg of total RNA. Shortly, messenger RNA was isolated according to poly A selection method by oligo dT beads and then fragmented, 100bp to 400bp, by fragmentation buffer firstly. Secondly double-stranded cDNA was synthesized using a SuperScript double-stranded cDNA synthesis kit with random hexamer primers. Then the synthesized cDNA was subjected to end-repair, phosphorylation and 'A' base addition according to Illumina's library construction protocol. Libraries were size selected for cDNA target fragments of 200-300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase for 15 PCR cycles. After quantified by TBS380, paired-end RNA-seq sequencing library was sequenced with the Illumina HiSeq 2500, 2 * 100bp read length. |
RNA-Seq |
TRANSCRIPTOMIC |
RT-PCR |
PAIRED
|
|
| 处理信息 |
Planned read length (bp) for mate 1: 100
Planned read length (bp) for mate 2: 100
Insert size (bp): 250
|
| 发布日期 | 2021-12-01 |
|---|
| 测序反应 |
| Run编号 |
Run序列文件信息 |
| File name | File size (MB) |
|---|
| CRR143136 |
CRR143136_f1.fastq.gz
CRR143136_r2.fastq.gz
|
373.92
369.8
|
| CRR143137 |
CRR143137_f1.fastq.gz
CRR143137_r2.fastq.gz
|
372.48
367.74
|
| CRR143138 |
CRR143138_f1.fastq.gz
CRR143138_r2.fastq.gz
|
375
369.92
|
| CRR143139 |
CRR143139_f1.fastq.gz
CRR143139_r2.fastq.gz
|
369.73
366.32
|
| CRR143140 |
CRR143140_f1.fastq.gz
CRR143140_r2.fastq.gz
|
364.64
361.82
|
| CRR143141 |
CRR143141_f1.fastq.gz
CRR143141_r2.fastq.gz
|
365.24
361.81
|
| CRR143142 |
CRR143142_f1.fastq.gz
CRR143142_r2.fastq.gz
|
184.73
183.12
|
|
| 提交者 | Ming Zhao (mingzhao1@hotmail.com) |
|---|
| 所属单位 | East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences |
|---|
| 提交日期 | 2020-06-04 |
|---|
