| Accession | CRX247014 |
| Organism | Mangifera indica |
| Title | Mango genome raw sequencing run 7 |
| BioProject | PRJCA005296 |
| BioSample | SAMC391076 |
| Platform | Illumina HiSeq X Ten |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
Fresh young leaves present at the seedling stage of Irwin were collected and fixed in for formaldehyde solution. HindIII was used to digest the chromatin extracted from the fixed leaves. The DNA fragments were then ligated together to form chimeric junctions after biotinylation. Next, the enriched chimeric junctions were physically sheared into DNA fragments of 300-700 bp in length. Biotin-containing DNA fragments were enriched through streptavidin pulldown and then subjected to Illumina Hiseq sequencing. |
Hi-C |
GENOMIC |
DNAse |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
|
| Release date | 2022-05-05 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR290568 |
CRR290568_f1.fq.gz
CRR290568_r2.fq.gz
|
9,247.45
9,738.23
|
|
| Submitter | xiaowei ma (maxiaowei428@126.com) |
|---|
| Organization | South Subtropical Crops Research Institu |
|---|
| Date submitted | 2021-06-08 |
|---|
