Experiment information
Accession CRX247014
Organism Mangifera indica
Title Mango genome raw sequencing run 7
BioProject PRJCA005296
BioSample SAMC391076
Platform Illumina HiSeq X Ten
Library
Library name Construction protocol Strategy Source Selection Layout
Fresh young leaves present at the seedling stage of Irwin were collected and fixed in for formaldehyde solution. HindIII was used to digest the chromatin extracted from the fixed leaves. The DNA fragments were then ligated together to form chimeric junctions after biotinylation. Next, the enriched chimeric junctions were physically sheared into DNA fragments of 300-700 bp in length. Biotin-containing DNA fragments were enriched through streptavidin pulldown and then subjected to Illumina Hiseq sequencing. Hi-C GENOMIC DNAse PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2022-05-05
Run
Run accession Run data file information
File nameFile size (MB)
CRR290568 CRR290568_f1.fq.gz
CRR290568_r2.fq.gz
9,247.45
9,738.23
Submitterxiaowei ma (maxiaowei428@126.com)
OrganizationSouth Subtropical Crops Research Institu
Date submitted2021-06-08