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CRA005456 Information
Title: Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process for ribosome scanning
BioProject: PRJCA007362 /
Release date: 2022-11-11
Files: 60
File size: 44.56 GB
Publication
Article title
Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process of ribosome scanning
Journal name
Genome Biology
Year
2022
DOI
10.1186/s13059-022-02829-1
PubMed ID
36510274

Dataset Downlaod
MetaData:
CRA005456.xlsx
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX504558 DNA-seq_wt_2A_dATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC876123
Run accession Run alias Run data file information
CRR568654 DNA-seq_wt_2A_dATG_rep2 File: CRR568654_f1.fastq.gz
File: CRR568654_r2.fastq.gz
CRX504557 DNA-seq_wt_2A_dATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC876122
Run accession Run alias Run data file information
CRR568653 DNA-seq_wt_2A_dATG_rep1 File: CRR568653_f1.fastq.gz
File: CRR568653_r2.fastq.gz
CRX504556 RNA-seq_wt_2A_dATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC876123
Run accession Run alias Run data file information
CRR568652 RNA-seq_wt_2A_dATG_rep2 File: CRR568652_f1.fastq.gz
File: CRR568652_r2.fastq.gz
CRX504555 RNA-seq_wt_2A_dATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC876122
Run accession Run alias Run data file information
CRR568651 RNA-seq_wt_2A_dATG_rep1 File: CRR568651_f1.fastq.gz
File: CRR568651_r2.fastq.gz
CRX504554 FASC-seq_wt_2A_dATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC876123
Run accession Run alias Run data file information
CRR568650 FASC-seq_wt_2A_dATG_rep2 File: CRR568650_f1.fastq.gz
File: CRR568650_r2.fastq.gz
CRX504553 FASC-seq_wt_2A_dATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC876122
Run accession Run alias Run data file information
CRR568649 FASC-seq_wt_2A_dATG_rep1 File: CRR568649_f1.fastq.gz
File: CRR568649_r2.fastq.gz
CRX498697 FASC-seq_upf1_uATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865881
Run accession Run alias Run data file information
CRR562614 FASC-seq_upf1_uATG_rep2 File: CRR562614_f1.fastq.gz
File: CRR562614_r2.fastq.gz
CRX498696 FASC-seq_upf1_uATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865880
Run accession Run alias Run data file information
CRR562613 FASC-seq_upf1_uATG_rep1 File: CRR562613_f1.fastq.gz
File: CRR562613_r2.fastq.gz
CRX498695 DNA-seq_upf1_uATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865881
Run accession Run alias Run data file information
CRR562612 DNA-seq_upf1_uATG_rep2 File: CRR562612_f1.fastq.gz
File: CRR562612_r2.fastq.gz
CRX498694 DNA-seq_upf1_uATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865880
Run accession Run alias Run data file information
CRR562611 DNA-seq_upf1_uATG_rep1 File: CRR562611_f1.fastq.gz
File: CRR562611_r2.fastq.gz
CRX498693 RNA-seq_upf1_uATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865881
Run accession Run alias Run data file information
CRR562610 RNA-seq_upf1_uATG_rep2 File: CRR562610_f1.fastq.gz
File: CRR562610_r2.fastq.gz
CRX498692 RNA-seq_upf1_uATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865880
Run accession Run alias Run data file information
CRR562609 RNA-seq_upf1_uATG_rep1 File: CRR562609_f1.fastq.gz
File: CRR562609_r2.fastq.gz
CRX498691 DNA-seq_ho_uATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865879
Run accession Run alias Run data file information
CRR562608 DNA-seq_ho_uATG_rep2 File: CRR562608_f1.fastq.gz
File: CRR562608_r2.fastq.gz
CRX498690 DNA-seq_ho_uATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865878
Run accession Run alias Run data file information
CRR562607 DNA-seq_ho_uATG_rep1 File: CRR562607_f1.fastq.gz
File: CRR562607_r2.fastq.gz
CRX498689 RNA-seq_ho_uATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865879
Run accession Run alias Run data file information
CRR562606 RNA-seq_ho_uATG_rep2 File: CRR562606_f1.fastq.gz
File: CRR562606_r2.fastq.gz
CRX498688 RNA-seq_ho_uATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865878
Run accession Run alias Run data file information
CRR562605 RNA-seq_ho_uATG_rep1 File: CRR562605_f1.fastq.gz
File: CRR562605_r2.fastq.gz
CRX498687 FASC-seq_ho_uATG_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865879
Run accession Run alias Run data file information
CRR562604 FASC-seq_ho_uATG_rep2 File: CRR562604_f1.fastq.gz
File: CRR562604_r2.fastq.gz
CRX498686 FASC-seq_ho_uATG_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC865878
Run accession Run alias Run data file information
CRR562603 FASC-seq_ho_uATG_rep1 File: CRR562603_f1.fastq.gz
File: CRR562603_r2.fastq.gz
CRX498124 FASC-seq_upf1_rep2 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC490740
Run accession Run alias Run data file information
CRR562041 FASC-seq_upf1_rep2 File: CRR562041_f1.fastq.gz
File: CRR562041_r2.fastq.gz
CRX498123 FASC-seq_upf1_rep1 Saccharomyces cerevisiae Illumina NovaSeq 6000 SAMC490739
Run accession Run alias Run data file information
CRR562040 FASC-seq_upf1_rep1 File: CRR562040_f1.fastq.gz
File: CRR562040_r2.fastq.gz
Submitter:Jinhui Kong (akjh2017@genetics.ac.cn)
Organization:Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Date submitted:2021-11-25