| Accession | CRX296006 |
| Organism | Severe acute respiratory syndrome coronavirus 2 |
| Accession in Other Database |
NCBI: SRX13241194 |
| Title | CERI-KRISP-K032216 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa |
| BioProject | PRJCA007411 |
| BioSample | SAMC496120 |
| Platform | Illumina MiSeq |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
| CERI-KRISP-K032216 |
Amplicons were generated using the ARTIC PCR tiling method. Libraries were prepared using the Nextera Flex DNA Library Preparation method using Illumina Nextera DNA CD Indexes. Libraries were run on the Illumina Miseq. |
AMPLICON |
VIRAL RNA |
RT-PCR |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 160
Planned read length (bp) for mate 2: 160
|
| Release date | 2021-12-01 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR344686 |
CRR344686.sra
|
44.84
|
|
| Submitter | This record was originated from NCBI and submitted by NGDC. |
|---|
| Organization | KwaZulu-Natal Research Innovation and Sequencing Platform-UKZN |
|---|
| Date submitted | 2021-12-01 |
|---|
