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Experiment information
Accession CRX701701
Organism Branchiostoma floridae
Title mixed embryonic tissues
BioProject PRJCA016712
BioSample SAMC1234865
Platform PacBio Sequel
Library
Library name Construction protocol Strategy Source Selection Layout
(1) Oligo (dT) enriched mRNA containing polyA;(2) Reverse transcription of mRNA into cDNA using SMARTer PCR cDNA Synthesis Kit;(3) PCR amplifies and enriches the synthesized cDNA, and determines the optimal PCR conditions through loop optimization;(4) Take some cDNA and use BluePippin for fragment screening, enrich fragments larger than 4Kb, and perform large-scale PCR on the screened fragments to obtain sufficient total cDNA;(5) Full length cDNA was used for damage repair, end repair, and SMRT dumbbell junction connection to construct an equimolar mixed library of non-screened fragments and fragments larger than 4Kb;(6) Nucleic acid exonuclease digestion to remove the sequence of unconnected connectors at both ends of cDNA;(7) Finally, a complete SMRT bell library was formed by binding primers and DNA polymerase. ISO-Seq TRANSCRIPTOMIC PCR SINGLE
Processing
Release date2023-09-13
Run
Run accession Run data file information
File nameFile size (MB)
CRR780323 CRR780323.bam 28,974.35
Submitterji zhiliang (appo@xmu.edu.cn)
OrganizationXiamen university
Date submitted2023-05-08