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实验基本信息
实验编号 CRX1626707
物种名称 Branchiostoma belcheri
标题 atacseq-Bb-A-gonad-female2
项目编号 PRJCA038664
样本编号 SAMC4992821
测序平台 Illumina NovaSeq 6000
建库信息
文库名称 文库构建方法 建库策略 样品来源 实验选择 文库布局
We collected gonadal tissues from male and female Bb individuals for ATAC-seq analysis, with each group comprising two biological replicates. The collected samples were washed with 0.04% BSA in 3x PBS and then lysed on ice for 7 minutes using a lysis buffer containing 10 mM Tris-HCl (pH 7.5), 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40, and 0.1% Tween 20. During lysis, gentle pipetting was performed until the tissues were completely disrupted, releasing the nuclei. The nuclei were then washed and resuspended in a pre-cooled wash buffer (10 mM Tris-HCl, pH 7.5; 10 mM NaCl; 3 mM MgCl2; 0.1% Tween 20) to obtain a nuclear suspension. Subsequently, library construction was carried out according to the manufacturer's instructions using the Chromatin Profile Kit for Illumina (Novoprotein, N248). ATAC-seq GENOMIC other PAIRED
处理信息 Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
发布日期2026-03-14
测序反应
Run编号 Run序列文件信息
File nameFile size (MB)
CRR1755720 CRR1755720_r1.fq.gz
CRR1755720_r2.fq.gz
2,833.6
2,786.21
提交者Jingjing Li (lijingjing.xmu2@gmail.com)
所属单位Xiamen University
提交日期2025-04-15
关联实验
Experiments(5)