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实验基本信息
实验编号 CRX1879201
物种名称 Mus musculus
标题 RNA_EAF.GV-cKO-rep3
项目编号 PRJCA043826
样本编号 SAMC5724451
测序平台 Illumina NovaSeq 6000
建库信息
文库名称 文库构建方法 建库策略 样品来源 实验选择 文库布局
Collected oocytes were lysed in TRIzol reagent (Takara), and ERCC Spike-In RNA (Thermo Fisher Scientific) was also added to the TRIzol reagent before RNA extraction. Total RNA was isolated by chloroform extraction, followed by isopropanol precipitation. To facilitate RNA precipitation, 1/10 volume of 3 M NaAc and 1 uL glycogen were added to the aqueous phase. The RNA pellet was washed twice with 75% ethanol and resuspended in nuclease-free water. Purified RNA was used for library preparation using the SMARTer Stranded Total RNA-Seq Kit v2 - Pico Input Mammalian (Takara) according to the manufacturer's instructions. Briefly, fragmented total RNA was first reverse-transcribed into cDNA, followed by limited-cycle PCR to add Illumina adapters. After purification, ribosomal cDNA was depleted, and the remaining fragments were further amplified using universal primers. Final libraries were purified and sequenced on an Illumina NovaSeq platform (173 bp paired-end reads) at Nanjing Jiangbei New District Biomedicine Public Service Platform Co., Ltd. RNA-Seq TRANSCRIPTOMIC PCR PAIRED
处理信息 Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
发布日期2026-01-11
测序反应
Run编号 Run序列文件信息
File nameFile size (MB)
CRR2020350 CRR2020350_r1.fastq.gz
CRR2020350_r2.fastq.gz
2,757.29
2,838.27
提交者Jiayu Chen (chenjiayu@tongji.edu.cn)
所属单位Shanghai First Maternity and Infant Hospital
提交日期2025-07-29