logo
NOTE:This page shows the detailed information about the selected Experiment and it's related information.
Experiment information
Accession CRX1049841
Organism Rattus norvegicus
Project PRJCA025727
Sample SAMC3706743
Platform Illumina NovaSeq 6000
Library
Library name Construction Protocol Strategy Source Selection Layout
Total RNA was isolated and purified using TRIzol reagent (Invitrogen, USA) following the manufacturer's procedure. Poly (A) RNA is purified from 30 μg total RNA using Dynabeads OligodT 25-61005 (Thermo Fisher, USA) using two rounds of purification. Then the cleaved RNA fragments were reverse-transcribed to create the cDNA by SuperScript II Reverse Transcriptase (Invitrogen, cat. 1896649, USA), which were next used to synthesise U-labeled second-stranded DNAs with E. coli DNA polymerase I (NEB, cat.m0209, USA), RNase H (NEB, cat.m0297, USA) and dUTP Solution (Thermo Fisher, cat.R0133, USA). At last, we performed sequencing using Illumina NovaSeq6000 PE150 (LC-Bio Technology Co., Ltd., Hangzhou, China). RNA-Seq TRANSCRIPTOMIC PCR PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2026-05-07
Related Data
Run Release Date Run Data File
File NameFile Size(Byte)
CRR1141982 2026-05-07 FTOOE_rep1_CleanData_R1.fq.gz
FTOOE_rep1_CleanData_R2.fq.gz
1299443198
1367539431
SubmitterZhixiang Zuo, Sun Yat-sen University Cancer Center
zuozhx@sysucc.org.cn
Create Date2024-05-08