- Scientific Name
- Oryza sativa
- Common Names
- red rice, rice; Asian cultivated rice;
- Bioproject
- PRJCA003215
- Biosample
- SAMC207343
- Accession No.
- GWHAORT00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR157068
- GVM variations of the species
- 18,166,415 (SNP), 952,283 (Indel)
- Submitter Organization
- Agricultural Genomics Institute at Shenzhen, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yuxiao Chang, changyuxiao@caas.cn
- Sequence author(s)
- Hui Zhang
- Released Date
- 2021-05-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu 2.0
- Sequencing & coverage
- PacBio 83.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 395,439,262 |
| GC content | 43.63% |
| Chromosomes sequence No. | 12 |
| Organellas sequence No. | 1 |
| Genome sequence No. | 179 |
| Maximum genome sequence length (bp) | 44,655,351 |
| Minimum genome sequence length (bp) | 11,226 |
| Average genome sequence length (bp) | 2,209,158 |
| Genome sequence N50 (bp) | 31,515,484 |
| Genome sequence N90 (bp) | 25,270,954 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 59,594 | 59,594 |
| Chloroplast | 27 | 27 |
| Others | 494 | 494 |
| Total | 60,115 | 60,115 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 8,124 | 8,124 |
| chr10 | 3,439 | 3,439 |
| chr11 | 3,911 | 3,911 |
| chr12 | 3,544 | 3,544 |
| chr2 | 6,408 | 6,408 |
| chr3 | 7,073 | 7,073 |
| chr4 | 5,330 | 5,330 |
| chr5 | 4,930 | 4,930 |
| chr6 | 4,734 | 4,734 |
| chr7 | 4,581 | 4,581 |
| chr8 | 4,090 | 4,090 |
| chr9 | 3,430 | 3,430 |
| Chloroplast | 27 | 27 |
| Others | 494 | 494 |
| Total | 60,115 | 60,115 |