- Scientific Name
- Severe acute respiratory syndrome coronavirus 2
- Common Names
- -
- Bioproject
- PRJCA005689
- Biosample
- SAMC400113
- Accession No.
- GWHBDJA01000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR343488
- GVM variations of the species
- 16,114 (SNP), 820 (Indel)
- Submitter Organization
- GDCDC&GDIPH, Guangdong Provincial Center for Disease Control and Prevention
- Contact
- Baisheng Li, libsn@126.com
- Sequence author(s)
- Baisheng Li, Jing Lu
- Released Date
- 2021-07-03
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- BWA 0.7.17-r1188
- Sequencing & coverage
- Illumina Miniseq 99
MGI 200 99 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Baisheng Li, et al. Viral infection and transmission in a large, well-traced outbreak caused by theSARS-CoV-2 Delta variant. Nature Communications. 2022, 13.
Statistics of Genome Assembly
| Genome size (bp) | 29,864 |
| GC content | 37.95% |
| Genome sequence No. | 1 |
| Maximum genome sequence length (bp) | 29,864 |
| Minimum genome sequence length (bp) | 29,864 |
| Average genome sequence length (bp) | 29,864 |
| Genome sequence N50 (bp) | 29,864 |
| Genome sequence N90 (bp) | 29,864 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 12 | 12 |