- Scientific Name
- Cucumis melo
- Common Names
- Oriental melon; muskmelon;
- Bioproject
- PRJCA013455
- Biosample
- SAMC2820425
- Accession No.
- GWHDOCV00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 40,686,353 (SNP), 8,782,297 (Indel)
- Submitter Organization
- College of Agriculture & Biotechnology, Zhejiang University
- Contact
- Lyu xiaolong, xiaolonglv@zju.edu.cn
- Sequence author(s)
- Lyu xiaolong
- Released Date
- 2023-07-31
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 1.0
- Sequencing & coverage
- PacBio 76.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 392,509,548 |
| GC content | 35.31% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 333 |
| Maximum genome sequence length (bp) | 36,352,544 |
| Minimum genome sequence length (bp) | 14,978 |
| Average genome sequence length (bp) | 1,178,707 |
| Genome sequence N50 (bp) | 30,383,440 |
| Genome sequence N90 (bp) | 24,754,865 |
Annotation of Whole Genome Assembly
| Pseudogene | Total | |
|---|---|---|
| Chromosome | 20,482 | 20,482 |
| Others | 710 | 710 |
| Total | 21,192 | 21,192 |
Annotation Details
| ChrID | Pseudogene | Total |
|---|---|---|
| chr1 | 2,046 | 2,046 |
| chr10 | 1,293 | 1,293 |
| chr11 | 1,866 | 1,866 |
| chr12 | 1,514 | 1,514 |
| chr2 | 1,518 | 1,518 |
| chr3 | 1,662 | 1,662 |
| chr4 | 1,840 | 1,840 |
| chr5 | 1,457 | 1,457 |
| chr6 | 2,161 | 2,161 |
| chr7 | 1,664 | 1,664 |
| chr8 | 1,992 | 1,992 |
| chr9 | 1,469 | 1,469 |
| Others | 710 | 710 |
| Total | 21,192 | 21,192 |