- Scientific Name
- Nymphaea colorata
- Common Names
- -
- Bioproject
- PRJCA001283
- Biosample
- SAMC072712
- Accession No.
- GWHAAYW00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR058166
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory of Ministry of Education for Genetics, Fujian Agriculture and Forestry University
- Contact
- Liangsheng Zhang, fafuzhang@163.com
- Sequence author(s)
- Liangsheng Zhang
- Released Date
- 2019-09-02
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear , Mitochondrion , Chloroplast )
- Assembly method
- canu 1.3
- Sequencing & coverage
- PacBio 124.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Liangsheng Zhang, et al. The water lily genome and the early evolution of flowering plants. Nature. 2020, 577:79-84
Statistics of Genome Assembly
| Genome size (bp) | 409,930,971 |
| GC content | 38.61% |
| Chromosomes sequence No. | 14 |
| Organellas sequence No. | 2 |
| Genome sequence No. | 806 |
| Maximum genome sequence length (bp) | 44,612,865 |
| Minimum genome sequence length (bp) | 3,011 |
| Average genome sequence length (bp) | 508,599 |
| Genome sequence N50 (bp) | 25,516,871 |
| Genome sequence N90 (bp) | 12,577,093 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 28,438 | 28,438 |
| Others | 3,037 | 3,037 |
| Total | 31,475 | 31,475 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,686 | 3,686 |
| chr10 | 1,997 | 1,997 |
| chr11 | 1,904 | 1,904 |
| chr12 | 1,661 | 1,661 |
| chr13 | 1,262 | 1,262 |
| chr14 | 753 | 753 |
| chr2 | 3,015 | 3,015 |
| chr3 | 2,371 | 2,371 |
| chr4 | 2,182 | 2,182 |
| chr5 | 1,955 | 1,955 |
| chr6 | 1,967 | 1,967 |
| chr7 | 1,770 | 1,770 |
| chr8 | 1,879 | 1,879 |
| chr9 | 2,036 | 2,036 |
| Others | 3,037 | 3,037 |
| Total | 31,475 | 31,475 |