- Scientific Name
- Psychrobacter faecalis
- Common Names
- -
- Bioproject
- PRJCA019328
- Biosample
- SAMC3046288
- Accession No.
- GWHDUTK00000000
- GWH reannotation accession
- GWHRA_DUTK00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Marine Life Sciences, Ocean University of China
- Contact
- Shen Fan, fs_ouc@stu.ouc.edu.cn
- Sequence author(s)
- Shen Fan
- Released Date
- 2024-06-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 3.15.5
- Sequencing & coverage
- Illumina 600
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDUTK00000000 | GWHRA_DUTK00000000.1 | ST_L021 | Draft genome in scaffold level | 2024-06-10 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,160,794 |
| GC content | 43.51% |
| Scaffold sequence No. | 14 |
| Maximum scaffold sequence length (bp) | 1,152,623 |
| Minimum scaffold sequence length (bp) | 5,704 |
| Average scaffold sequence length (bp) | 225,771 |
| Scaffold N50 (bp) | 397,406 |
| Scaffold N90 (bp) | 148,058 |
Statistics of Genome Assembly
| Genome size (bp) | 3,160,794 |
| GC content | 43.51% |
| Scaffold sequence No. | 14 |
| Maximum scaffold sequence length (bp) | 1,152,623 |
| Minimum scaffold sequence length (bp) | 5,704 |
| Average scaffold sequence length (bp) | 225,771 |
| Scaffold N50 (bp) | 397,406 |
| Scaffold N90 (bp) | 148,058 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2,546 | 41 | 3 | 1 | 18 | 25 | 2,634 |