- Scientific Name
- Cynara cardunculus var. scolymus
- Common Names
- globe artichoke, artichoke; Cynara cardunculus Scolymus Group, Cynara scolymus, Cynara cardunculus subsp. scolymus
- Bioproject
- PRJNA238069
- Biosample
- SAMN03402638
- Accession No.
- GCA_001531365.2
- RefSeq Accession No.
- GCF_001531365.2
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Compositae Genome Project
- Released Date
- 2025-02-23
- NCBI Released Date
- 2018-04-17
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001531365.2 | GCF_001531365.2 | identical | CcrdV1.1 | Draft genome in scaffold level | 2018-04-17 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_001531365.1 | GCF_001531365.1 | identical | CcrdV1 | Draft genome in scaffold level | 2018-04-17 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 724,962,400 |
| Chromosomes, organellas and plasmids sequnece No. | 17 |
| Genome sequence No. | 8,174 |
| GC content | 35.5 |
| Scaffold sequence No. | 13,479 |
| Scaffold L50 | 1,407 |
| Scaffold N50 (bp) | 126,020 |
| Scaffold N75 (bp) | 59,534 |
| Scaffold N90 (bp) | 28,784 |
| Contig sequence No. | 73,303 |
| Contig L50 | 9,578 |
| Contig N50 (bp) | 19,407 |
| Unique components No. | 13,479 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 59,824 |
| Ns gap sequence region length (bp) | 70,492,307 |
| Gaps No. between scaffolds | 5,305 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 26498 | 0 | 0 | 0 | 0 | 0 | 26498 |
Statistics of Genome Assembly
| Genome size (bp) | 724,962,400 |
| Chromosomes, organellas and plasmids sequnece No. | 17 |
| Genome sequence No. | 8,174 |
| GC content | 35.5 |
| Scaffold sequence No. | 13,479 |
| Scaffold L50 | 1,407 |
| Scaffold N50 (bp) | 126,020 |
| Scaffold N75 (bp) | 59,534 |
| Scaffold N90 (bp) | 28,784 |
| Contig sequence No. | 73,303 |
| Contig L50 | 9,578 |
| Contig N50 (bp) | 19,407 |
| Unique components No. | 13,479 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 59,824 |
| Ns gap sequence region length (bp) | 70,492,307 |
| Gaps No. between scaffolds | 5,305 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 26313 | 586 | 16 | asse2274 | 1085 | 1 | 30275 |