Home - HalOmics

HalOmics is a specialized multi-omics database for halophytes, integrating genomic, transcriptomic, proteomic, epigenomic, and phenotypic data. This resource supports research on salt-tolerance mechanisms, enabling genetic improvement and molecular breeding of stress-resistant crops. By providing comprehensive biological data, HalOmics facilitates sustainable agriculture in saline-affected regions, addressing global soil salinization challenges.

species

This module archives genus and species information of salt-tolerant plants from all over the world.

1 Genus

7 Organisms

This module collects genome assembly and gene annotation data for each species

3 Genome assemblies

187380 Annotated genes

This module comprises RNA-seq datasets obtained from distinct tissues / stages or different treatment conditions.

144 RNA-seq samples

Express-Pattern & Different-Exp

This module contains genomic variants, including SNPs, InDels from a group of populations.

135 Individuals

27124626 Variants

This module collects epigenomic data, including dna methylation from a variety of species

48 xxxx

41 xxxx

This module collects plant phenotype data from different environments.

161 Traits

XXX

Related publications

• Telomere-to-telomere genome of the allotetraploid legume Sesbania cannabina reveals transposon-driven subgenome divergence and mechanisms of alkaline stress tolerance. Science China Life Sciences (2023).

• The Spartina alterniflora genome sequence provides insights into the salt-tolerance mechanisms of exo-recretohalophytes. Plant biotechnology journal (2024).

Resource

Tools

BLAST-Toolkits

BLASTN BLASTP BLASTX TBLASTN

Seq-Fetch

GO Enrichment

KEGG Enrichment

News

Methylation data is online. (2026/06/03) sRNA data is online. (2026/04/23) Phenome model is online. (2026/01/23) Variome model is online. (2025/12/23) Meta information of species is online. (2025/08/30)

Links

Genome Variation Map (GVM) Open Plant Image Archiva (OPIA) GWAS Atlas SoyOmics SugarcaneOmics

Visitors