ICG00103 Solanum tuberosum - Internal Control Genes Database (ICG)

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Solanum tuberosum

Accession: ICG00103

Latin Name: Solanum tuberosum

Common Name: Potato

Taxonomy ID: 4113

Description: Solanum tuberosum L. is a an economically important species of the Solanaceae. It occupies a wide eco-geographical range and is unique among the major world food crops in producing stolons (underground stems) that under suitable environmental conditions swell to form tubers. The tubers are a globally important dietary source of starch, protein, antioxidants and vitamins, serving the plant as both a storage organ and a vegetative propagation system.

ICG00103-1

Abiotic Stresses

Tissues

Temperature Conditions

Tissues

Internal Control Genes

Gene Symbol	Gene Model	Application Scenario	Accession Number	Primers(5' - 3') (Forward/Reverse)	Size (bp)	Annealing Temperature	Detection
ef1a	Elongation Factor	Tuber Low Temperature Condition	AB061263	F: ATTGGAAACGGATATGCTCCA R: TCCTTACCTGAACGCCTGTCA	101	60	SYBR
APT	Adenine Phosphoribosyltransferase	Tuber Low Temperature Condition	CK270447	F: GAACCGGAGCAGGTGAAGAA R: GAAGCAATCCCAGCGATACG	121	60	SYBR

Molecular Types:

mRNA

Evaluation Methods

geNorm

NormFinder

BestKeeper

Contact

Name: Jose Ignacio Ruiz de Galarreta

Email: jiruiz@neiker.net

Institution: The Basque Institute of Agricultural Research and Development, PO Box 46, E01080 Vitoria, Spain

Reference

ICG00103-2

Biotic Stresses

Pest Challenge

Internal Control Genes

Gene Symbol	Gene Model	Application Scenario	Accession Number	Primers(5' - 3') (Forward/Reverse)	Size (bp)	Annealing Temperature	Detection
RPN7	Proteasome 26S Subunit, Non-ATPase	Cyst Nematodes Infection	-	F: TTGGGGTGTCTGAGGATTTC R: CATTCTTTGCATCAGGACGA	123	60	SYBR
UBP22	Ubiquitin	Cyst Nematodes Infection	-	F: CAATGCAGCAACGCCAGA R: AGCAGCAGTAGCACCACCAC	98	60	SYBR
OXA1	Oxa1	Cyst Nematodes Infection	-	F: GCGATTCTGAAGCCAAAACT R: TTGTTGACCTTCAGCCACAG	87	60	SYBR
MST2	Mercaptopyruvate Sulfurtransferase	Cyst Nematodes Infection	-	F: AGTGCAGCTCGTGTATGGTG R: ATCCAGAAGCACGCCATCT	94	60	SYBR

Molecular Types:

mRNA

Evaluation Methods

Contact

Name: Bernard Caromel

Email: Bernard.Caromel@avignon.inra.fr

Institution: INRA, UR1052 GAFL Génétique et Amélioration des Fruits et Légumes, Domaine Saint Maurice, Allée des Chênes, CS 60094, 84143 Montfavet Cedex, France

Reference

ICG00103-3

Biotic Stresses

Viral Infection

Tissues

Internal Control Genes

Gene Symbol	Gene Model	Application Scenario	Accession Number	Primers(5' - 3') (Forward/Reverse)	Size (bp)	Annealing Temperature	Detection
sEF1a	Elongation Factor	Potato Virus Y Infection Leaf	AB061263.1	F: AGATTGACAGGCGTTCAGGTAAGG R: ATGGTGGGTATTCAGCAAAGGTC	130	60	SYBR
sTUBb	Tubulin	Potato Virus Y Infection Leaf	Z33402.1	F: TGTTTGGACAGTCTGGTGCTGG R: TCACAATTCTCCGCTTCTTTACG	115	60	SYBR
seIF5	Initiation Factor	Potato Virus Y Infection Leaf	PGSC0003DMC400053284	F: ACTTCCCTTGTCAATGGTTCTC R: AGGATTTCAGTTTCAGGGTTTCC	116	60	SYBR

Molecular Types:

MicroRNA

Evaluation Methods

geNorm

NormFinder

BestKeeper

Contact

Name: Zhimin Yin

Email: z.yin@ihar.edu.pl

Institution: Plant Breeding and Acclimatization Institute, National Research Institute, Moch ow Research Center, Platanowa 19, Mochow, PL-05-831, Poland

Basic Information

Gene Summary

mRNA

Studies (3)

ICG00103-1

Internal Control Genes

Molecular Types:

Evaluation Methods

Contact

Reference

ICG00103-2

Internal Control Genes

Molecular Types:

Evaluation Methods

Contact

Reference

ICG00103-3

Internal Control Genes

Molecular Types:

Evaluation Methods

Contact

Reference

ICG00103-1	ef1a APT
ICG00103-2	RPN7 UBP22 OXA1 MST2
ICG00103-3	sEF1a sTUBb seIF5