ICG00113 Vitis vinifera - Internal Control Genes Database (ICG)

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Vitis vinifera

Accession: ICG00113

Latin Name: Vitis vinifera

Common Name: Common grape vine

Taxonomy ID: 29760

Description: Vitis vinifera is considered to be one of the major fruit crops in the world based on hectares cultivated and economic value. Grapes are used not only for wine but also for fresh fruit, dried fruit, and juice production. Wine is by far the major product of grapes. There are currently between 5,000 and 10,000 varieties of grapes though only a few are of commercial significance for wine and table grape production.

ICG00113-1

Biotic Stresses

Fungal Infection

Cultivars

Internal Control Genes

Gene Symbol	Gene Model	Application Scenario	Accession Number	Primers(5' - 3') (Forward/Reverse)	Size (bp)	Annealing Temperature	Detection
UBQ	Ubiquitin	Resistant Cultivar Regent Downy Mildew Infection	EC922622	F: GAGGGTCGTCAGGATTTGGA R: GCCCTGCACTTACCATCTTTAAG	75	60	SYBR
EF1a	Elongation Factor	Susceptible Cultivar Trincadeira Resistant Cultivar Regent Downy Mildew Infection	EC959059	F: GAACTGGGTGCTTGATAGGC R: ACCAAAATATCCGGAGTAAAAGA	164	60	SYBR
GAPDH	Glyceraldehyde-3-Phosphate Dehydrogenase	Resistant Cultivar Regent Downy Mildew Infection	EF192466	F: TCAAGGTCAAGGACTCTAACACC R: CCAACAACGAACATAGGAGCA	226	60	SYBR
SAND	Sand Family Protein	Susceptible Cultivar Trincadeira Downy Mildew Infection	CF405409	F: CAACATCCTTTACCCATTGACAGA R: GCATTTGATCCACTTGCAGATAAG	76	60	SYBR

Molecular Types:

mRNA

Evaluation Methods

geNorm

NormFinder

BestKeeper

Contact

Name: Filipa Monteiro

Email: fimonteiro@fc.ul.pt

Institution: Plant Systems Biology Lab, Center of Biodiversity, Functional & Integrative Genomics (BioFIG), Science Faculty of Lisbon University, Lisboa, Portugal

Reference

ICG00113-2

Biotic Stresses

Fungal Infection

Tissues

Internal Control Genes

Gene Symbol	Gene Model	Application Scenario	Accession Number	Primers(5' - 3') (Forward/Reverse)	Size (bp)	Annealing Temperature	Detection
VATP16	ATPase	Leaf P. Viticola Infection B. Cinerea Infection	LOC100248726	F: CTTCTCCTGTATGGGAGCTG R: CCATAACAACTGGTACAATCGAC	112	60	SYBR
60SRP	60S Ribosomal Subunit	Leaf P. Viticola Infection B. Cinerea Infection	XM_002270599	F: ATCTACCTCAAGCTCCTAGTC R: CAATCTTGTCCTCCTTTCCT	165	60	SYBR

Molecular Types:

mRNA

Evaluation Methods

geNorm

NormFinder

BestKeeper

Contact

Name: Marielle Adrian

Email: marielle.adrian@u-bourgogne.fr

Institution: Unité Mixte de Recherche INRA 1088/CNRS 5184, Université de Bourgogne Plante-Microbe-Environnement, 17 rue Sully, BP 86510, 21065 Dijon cedex, France

Reference

ICG00113-3

Abiotic Stresses

Temperature Conditions

Internal Control Genes

Gene Symbol	Gene Model	Application Scenario	Accession Number	Primers(5' - 3') (Forward/Reverse)	Size (bp)	Annealing Temperature	Detection
U6 snRNA	SnoRNA	Salt Stress Low Temperature Condition	-	F: CCGATAAAATTGGAACGATACAGAG R: TCGATTTGTGCGTGTCATCCT	-	60	SYBR
miR160e	MiRNA	Salt Stress Low Temperature Condition	-	F: GCGGCGGTGCCTGGCTCC R: GTGCAGGGTCCGAGGT	-	60	SYBR
miR164a	MiRNA	Salt Stress	-	F: GCGGCGGTGGAGAAGCAG R: GTGCAGGGTCCGAGGT	-	60	SYBR
miR168	MiRNA	Drought Stress Low Temperature Condition	-	F: GCGGCGGTCGCTTGGTGC R: GTGCAGGGTCCGAGGT	-	60	SYBR

Molecular Types:

MicroRNA @@ SnoRNA

Evaluation Methods

geNorm

NormFinder

BestKeeper

Contact

Name: Shiping Wang

Email: fruit@sjtu.edu.cn

Institution: Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.

Basic Information

Gene Summary

MicroRNA

mRNA

Small nucleolar RNAs

Studies (3)

ICG00113-1

Internal Control Genes

Molecular Types:

Evaluation Methods

Contact

Reference

ICG00113-2

Internal Control Genes

Molecular Types:

Evaluation Methods

Contact

Reference

ICG00113-3

Internal Control Genes

Molecular Types:

Evaluation Methods

Contact

Reference