ENST00000383019.2

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000383019.2

Source

Gencode19

Same with

lnc-SNURF-6:1,NONHSAT041160

Classification

intergenic

Length

1967 nt

Genomic location

chr15+:26147507..26298267

Exon number

5

Exons

26147507..26147713,26260481..26261168,26294272..26294389,26297175..26297374,26297514..26298267

Genome context

Sequence
000001 GCTGATGCAT CGCAGTGTCC ACATATGCAG GGAGGCTGGT TTCCTAGGAA GCCTCCCAAT GAGGAAATTG TTGGGAATGT 000080
000081 GCTGCAAGGC GCTGCCTCGC TCTGGAGCCA GACGAGAGGC CGGAGCATCC GCCCCAACAT GGCTGGCTGT GTGAGCCTCA 000160
000161 GGAACGCTGG CAGCTCTGCA AGACTCTCTG CCATCTGCAA AATGTGGCCC AAAAACTACT TAAAAATTAA TCATATCAAA 000240
000241 ACAAGAGCAT CCATGAACCA ACTTCTGAGA ATTGCTGTTG CTGAGAAAGG CCTAGTGAGC CCCTGTTTCC TCAGGCCACC 000320
000321 TTCCTCTTCC TCCCATTGCC AAGGGCTCCT GTCGCCCCCG TCTGCGTTCT CCTGCCTGGC GCTCTGTCAC CTCCTGTGGA 000400
000401 GGCCCCACGT GTTCATCTGA GGGCTGCTGC TGCCCTTCCA GTATTATCCA CACCTGCCAT TATTACTGGG TCTTGCTCTC 000480
000481 TGACAAAGGG GCTACAGCGC TCCTTCCTGG TACACATGCA GCCCTCCTGC CCTTGCTCAA GGACCGCACC TCAACAGGGC 000560
000561 ACCTGCTCTC ATCTGGCCAT CGCCTCGGCA TAGGTAGCTC AAGATAGATG TTCAGCCCCA AGCCTCATGG CTGACTAACC 000640
000641 CTGTGGAACT TAAAAGTTCA AAGACAGGGA TGCCTGGATT CTGTCTCTGC CTCTGCACGT GTGTCTGTGC AGGCATCCGA 000720
000721 GCTGACCGGC CAGCTTCCCG CTGGTGGAGG TGGGAGGCAT AGGCTGCTTC TACACGCCCA AAGCCTACCC ACTACAGAGT 000800
000801 TACTTGCAGT CACACATGCT GACTAAGGGA GGAGAGCAAC TCCAATCAAA CGAAGCTAAG GAAGATAGCA CACAAACTGG 000880
000881 CAAGAAATTC CTGAGAGTCT CACCCTGTTA CCCAGACTGG AGTGAACTGG CACAATCTCG GCTCACTGTC ACCTCCACCT 000960
000961 CCCAGGTTCA AGACATTCTC CTGCCTCAGC CTCCTGAGTA GCTGGGATTA CAGAGGAGGA AAATGAGCTG CAGAAGGATC 001040
001041 AAATGACCTG CCTGAGGTGC CCTATCTGTT GGCACAGGCC AGAGCACATG GTGGATGCAG GGGCACCCCC TTCCCTTCTC 001120
001121 CTCCCCTCCG GCTCTTTGCT GACAGGATTC TCTCTTGCCT TCTCTGATGG TACCTGTGCT ACGTGCCACA TCCTTTCCCT 001200
001201 CAATGAATTT CAGGCAGTGG AAGGGGCCGC AGAAGTTCCT TGACTCATGA GGCGAGGCAT TCAGCGGCCT CGTGACACCT 001280
001281 CCCAGGATCT GCAGTCATTG GGCTGCACTT GCCAATAGCA ACACCTGGCA AAAATAGCTA AGAAGCAGAG CGGCCTGGGC 001360
001361 TCAGGAGCTG AGCAACCCCT GACTGGCCAG ATGGAGACTG TGTTGAGCTC TGCCCAAGCC CTGTGATCCT GGAAAACAGT 001440
001441 GAAGTTAAGG AGCCATCTGC ATTCTAGGGA ATGGCCCACT GCAAAAAATA GCCTTCCTTA TAGGACGTAG AGGACTCATG 001520
001521 ATGTCCCCTC ATTTATGATG AGCCAACACA CAGCCCTTCC AAATTCCGAT TCTTTGCTTC ATAACTGATG AGCTGTTTTG 001600
001601 TTCCCACTGG TCAATCGGAA CAACATTCTT GCTAACCAGA TTTTGGTTCA GCTCTTCTCC CTCCCCATGT ACCTGCCCTG 001680
001681 TGTCCTGTCC TCATCCTGAG CCAGCACACA CCCCTCCTTA GTAGCTCCTC CTGCAGCAGG CTGACCTCGG ACTCTCCCTG 001760
001761 ATCCATTGTC CAAATATATC ACCCTTTCAC CCTACATCCT CACACCCCAT TCTTTCTAGT TTTGTTCATT CCTCCCTGTG 001840
001841 AAAGATGAAC CCTCTTTGCC TAACCCCGGA CCTGCTTGCA GACTGCTATG ATGGCCAGAG TGTCCCCCCT ACTGCAAGAG 001920
001921 TCCCTTCTGT CCCTTGCAAC ATCTTTTAAA TAAAATCTCT CTTTACC
[back to top]

Predicted Small Protein

Name ENST00000383019.2_smProtein_815:1000
Length 62
Molecular weight 6793.5149
Aromaticity 0.0491803278689
Instability index 72.9836065574
Isoelectric point 4.92486572266
Runs 9
Runs residual 0.00527605049934
Runs probability 0.0479302832245
Amino acid sequence MLTKGGEQLQSNEAKEDSTQTGKKFLRVSPCYPDWSELAQSRLTVTSTSQVQDILLPQPP
E
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLHHHHHHLLEEEELLLLLEEEELLLLL
L
PRMN -
PiMo -