ENST00000398177.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000398177.1

Source

Gencode19

Same with

lnc-IL34-2:2

Classification

antisense

Length

2145 nt

Genomic location

chr16+:70789036..70807145

Exon number

6

Exons

70789036..70789152,70789916..70789990,70795056..70795161,70800346..70800459,70802749..70802846,70805511..70807145

Genome context

Sequence
000001 ACACCACCCT GCAGCAGGCC TGGCCACCGG CCTCAGCGCT TCTGGGAGAA GGTCAGCCAG GTGGAAGATG GAGAGGGCTT 000080
000081 CTGGACTGAG CCCTGGAGGG GGGCTAGGGG CCACCAGCAG GCAGATGAGC CCTGGGACCC AGCTGGCCAA CCCACCTGAC 000160
000161 CACGGTGACA AGGACTGCTT GGGAAGGATA AGCCCAGGTT CGGGAAAGCA AATTCAGGCT GCAGGACAGC TGCCCGGGCC 000240
000241 CCCCACAAGC CTGGCACCAG CCCAGGGAAG ACTGAGGAGC CTCACTCCAT GGGGACTGCA AACACCTGAA CACAGCGAAC 000320
000321 CTGAAGGTAT AGGGCATCTT CAGGCTGCTA CTGAGGCGGT CCTGCCGCAC TCAACCCAGA ACCTCATCAC TAAAAGGAAC 000400
000401 CTCATGGTTC AGGCTAGAGT GCAGTGGCGC GATCTCGGCT CACTGAAACC TCCGCCTCCC AGGTTCAAGC AATTCTCCTG 000480
000481 CTTCAGCCTC CCAAGTAGCT AGGAGTACAG ACATGGTCTC ACTCTGTTAT CCAGGCTAGA GTGCAGTGGT GTGATCTCAG 000560
000561 CTCACTTCAA CCTCTGGCTC AAGTGATCCT CCCACCTCAG CCTCCCCAAG TAGCTGGGAC TACAGGCACA CGCCACCAGG 000640
000641 CCCAGATAAT TTTTTGTATT TTCAGTAAAA ACAGGGTCTC GCCATGTTGC CCAGACTGGT CTTAAACTCC TGAGCTCAAG 000720
000721 CGATGTGCCT GCCTTGGCCT CCCCAAGTGC TGGGATTAGA GGCATAAGCC ACCATGTCTG GCCCCCAGTG GCTTCTAATC 000800
000801 CGCCCTATCT ATCCATCAAG CCTGGGTGGG GTGGGCTTGC TCAGTGTCCT TCAGATTCCT TCATCAATTA ACTCTTTTGT 000880
000881 GTACGAGGGT GTCCCAAAAG CAGCAGCCGC GAGTAGAATT TGCCTTGGGT CATTGCTGTA GTCTCCCGCA TCCAGGAAAG 000960
000961 ATCTAGGCCG CTCGCTTTCC ACAAACCTTC TGGCTGAAAC AAGCCACTTA CCTGGCTGCA GTGAAGACAC TGATGCCGCT 001040
001041 ACTGAAGCTG GAGTCACAGG AACCATCTGG ACCTCCTGGG AGAGGAAGAG GAACAAGGGG TCATGAAAGG CTGTTGGCTC 001120
001121 TCTTGAATAA ACAAGACCCC TGTGACAAGC ACACACAGAA CTCTCCAGAG CCCCATACCT TGATTCAGGC TCTTCAAAAG 001200
001201 GACCATGGCT CTGGAGCCCT GAGGACCCAA CCAACGCCCA GTCATTCTCG ATAGTCCCCA AGCTTGTAAG TCTGTAGTCA 001280
001281 CAGTGATCTC ACAAGGAGGG GACACCAGTG CTAAACACAT CTGTCAAATC TCAGAAGGGA TCACTGGCCT GAGGGGAATG 001360
001361 GATGTTTAAA ATGACAGATA ATACCCAGCA TCCTTAGCTA TCAGGAAAAT GCAAATCCAA ACCACAAGAT ACTACTGTAC 001440
001441 ACCCATCAGG ATGGCTAAAA TAAAAGACAA ATAATAGCAA GTGTTGATGA GAATGTGGAG AAACTGGAAC CCTCGTACAT 001520
001521 TGCTGGTGGG AATGTAAAAT GGTGCAAGCT GCTTTGGAGA ACAGTCTGGC CATTCCTCCA AAGGCTAAAC ATAGTCACCA 001600
001601 CATGACTCAG CAGCTCCACT CCTAGGTATA TGCCAAAGAG AAATGAAAAC TTATGGCCAC ATGAAACCTT GTATATCAAT 001680
001681 CATGTTCACA TCAGCATTAT CTACAATAGC CAAAAAGCAG AAGCAACCGA AATATCTATC AACAGATGAA TGGATAAATG 001760
001761 AGGTGTGGTA TAGCCATACA ATGGACTATT ATTTGGCAAT AAAAAGGGAT GAAGTACTGA TGCACGCCAT AAAAATGAAC 001840
001841 TTTAAAAACA TTGTGTTAAG TGAAAGAAGC CAGTCATAAA AGACTACATA TTGTATCCCT TTCTCGAAAG TGTTTAGAAC 001920
001921 AGGCAAACCT ATGGAGACGG AAAATGGACT GGAGGTTGCC TAGGACTGGA GGAGACGGGG GAATAGGGTA TAATGGCTAA 002000
002001 TGGATTCTTT CAAGGGCACG GAAAATATTC TAAAATTGAT TGTGGTGATG GTTACATAAC CCTGTGAATC TACAAAGTCA 002080
002081 CTGAATTGTA CACTTGATGT TGGGTGAATT GTGTGGTACA TGAATTCTAT CTCAATAAAG GGCTT
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Predicted Small Protein

Name ENST00000398177.1_smProtein_773:940
Length 56
Molecular weight 5728.7245
Aromaticity 0.0727272727273
Instability index 57.1727272727
Isoelectric point 9.18511962891
Runs 9
Runs residual 0.0121212121212
Runs probability 0.0336316708866
Amino acid sequence MSGPQWLLIRPIYPSSLGGVGLLSVLQIPSSINSFVYEGVPKAAAASRICLGSLL
Secondary structure LLLLEEEEEELLLLLLLLLLEEEEEEEELLLLLLEEELLLHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii