ENST00000398177.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000398177.1 |
Source |
Gencode19 |
Same with |
lnc-IL34-2:2 |
Classification |
antisense |
Length |
2145 nt |
Genomic location |
chr16+:70789036..70807145 |
Exon number |
6 |
Exons |
70789036..70789152,70789916..70789990,70795056..70795161,70800346..70800459,70802749..70802846,70805511..70807145 |
Genome context |
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Sequence |
000001 ACACCACCCT GCAGCAGGCC TGGCCACCGG CCTCAGCGCT TCTGGGAGAA GGTCAGCCAG GTGGAAGATG GAGAGGGCTT 000080
000081 CTGGACTGAG CCCTGGAGGG GGGCTAGGGG CCACCAGCAG GCAGATGAGC CCTGGGACCC AGCTGGCCAA CCCACCTGAC 000160 000161 CACGGTGACA AGGACTGCTT GGGAAGGATA AGCCCAGGTT CGGGAAAGCA AATTCAGGCT GCAGGACAGC TGCCCGGGCC 000240 000241 CCCCACAAGC CTGGCACCAG CCCAGGGAAG ACTGAGGAGC CTCACTCCAT GGGGACTGCA AACACCTGAA CACAGCGAAC 000320 000321 CTGAAGGTAT AGGGCATCTT CAGGCTGCTA CTGAGGCGGT CCTGCCGCAC TCAACCCAGA ACCTCATCAC TAAAAGGAAC 000400 000401 CTCATGGTTC AGGCTAGAGT GCAGTGGCGC GATCTCGGCT CACTGAAACC TCCGCCTCCC AGGTTCAAGC AATTCTCCTG 000480 000481 CTTCAGCCTC CCAAGTAGCT AGGAGTACAG ACATGGTCTC ACTCTGTTAT CCAGGCTAGA GTGCAGTGGT GTGATCTCAG 000560 000561 CTCACTTCAA CCTCTGGCTC AAGTGATCCT CCCACCTCAG CCTCCCCAAG TAGCTGGGAC TACAGGCACA CGCCACCAGG 000640 000641 CCCAGATAAT TTTTTGTATT TTCAGTAAAA ACAGGGTCTC GCCATGTTGC CCAGACTGGT CTTAAACTCC TGAGCTCAAG 000720 000721 CGATGTGCCT GCCTTGGCCT CCCCAAGTGC TGGGATTAGA GGCATAAGCC ACCATGTCTG GCCCCCAGTG GCTTCTAATC 000800 000801 CGCCCTATCT ATCCATCAAG CCTGGGTGGG GTGGGCTTGC TCAGTGTCCT TCAGATTCCT TCATCAATTA ACTCTTTTGT 000880 000881 GTACGAGGGT GTCCCAAAAG CAGCAGCCGC GAGTAGAATT TGCCTTGGGT CATTGCTGTA GTCTCCCGCA TCCAGGAAAG 000960 000961 ATCTAGGCCG CTCGCTTTCC ACAAACCTTC TGGCTGAAAC AAGCCACTTA CCTGGCTGCA GTGAAGACAC TGATGCCGCT 001040 001041 ACTGAAGCTG GAGTCACAGG AACCATCTGG ACCTCCTGGG AGAGGAAGAG GAACAAGGGG TCATGAAAGG CTGTTGGCTC 001120 001121 TCTTGAATAA ACAAGACCCC TGTGACAAGC ACACACAGAA CTCTCCAGAG CCCCATACCT TGATTCAGGC TCTTCAAAAG 001200 001201 GACCATGGCT CTGGAGCCCT GAGGACCCAA CCAACGCCCA GTCATTCTCG ATAGTCCCCA AGCTTGTAAG TCTGTAGTCA 001280 001281 CAGTGATCTC ACAAGGAGGG GACACCAGTG CTAAACACAT CTGTCAAATC TCAGAAGGGA TCACTGGCCT GAGGGGAATG 001360 001361 GATGTTTAAA ATGACAGATA ATACCCAGCA TCCTTAGCTA TCAGGAAAAT GCAAATCCAA ACCACAAGAT ACTACTGTAC 001440 001441 ACCCATCAGG ATGGCTAAAA TAAAAGACAA ATAATAGCAA GTGTTGATGA GAATGTGGAG AAACTGGAAC CCTCGTACAT 001520 001521 TGCTGGTGGG AATGTAAAAT GGTGCAAGCT GCTTTGGAGA ACAGTCTGGC CATTCCTCCA AAGGCTAAAC ATAGTCACCA 001600 001601 CATGACTCAG CAGCTCCACT CCTAGGTATA TGCCAAAGAG AAATGAAAAC TTATGGCCAC ATGAAACCTT GTATATCAAT 001680 001681 CATGTTCACA TCAGCATTAT CTACAATAGC CAAAAAGCAG AAGCAACCGA AATATCTATC AACAGATGAA TGGATAAATG 001760 001761 AGGTGTGGTA TAGCCATACA ATGGACTATT ATTTGGCAAT AAAAAGGGAT GAAGTACTGA TGCACGCCAT AAAAATGAAC 001840 001841 TTTAAAAACA TTGTGTTAAG TGAAAGAAGC CAGTCATAAA AGACTACATA TTGTATCCCT TTCTCGAAAG TGTTTAGAAC 001920 001921 AGGCAAACCT ATGGAGACGG AAAATGGACT GGAGGTTGCC TAGGACTGGA GGAGACGGGG GAATAGGGTA TAATGGCTAA 002000 002001 TGGATTCTTT CAAGGGCACG GAAAATATTC TAAAATTGAT TGTGGTGATG GTTACATAAC CCTGTGAATC TACAAAGTCA 002080 002081 CTGAATTGTA CACTTGATGT TGGGTGAATT GTGTGGTACA TGAATTCTAT CTCAATAAAG GGCTT |
Predicted Small Protein
Name | ENST00000398177.1_smProtein_773:940 |
Length | 56 |
Molecular weight | 5728.7245 |
Aromaticity | 0.0727272727273 |
Instability index | 57.1727272727 |
Isoelectric point | 9.18511962891 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0336316708866 |
Amino acid sequence | MSGPQWLLIRPIYPSSLGGVGLLSVLQIPSSINSFVYEGVPKAAAASRICLGSLL |
Secondary structure | LLLLEEEEEELLLLLLLLLLEEEEEEEELLLLLLEEELLLHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii |