ENST00000399003.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000399003.1 |
Source |
Gencode19 |
Same with |
lnc-MPEG1-1:1,NONHSAT021520 |
Classification |
intergenic |
Length |
2805 nt |
Genomic location |
chr11-:59036349..59051506 |
Exon number |
2 |
Exons |
59036349..59039081,59051435..59051506 |
Genome context |
|
Sequence |
000001 ACTGGACATC TGCAGAGAGG ACAAGAAATG GGGCACCCAC ACAATCAAAA CCCCAGGGGA AAAGGCTTGA AGGTTCAGCC 000080
000081 AAAAATCCAG CCCCTCTCAA AGGACAAAGA TCAACCTTCC AGAACAATTA GCAAACACTT CTCAGAGTCC TCCATGCTGT 000160 000161 GCAGATGGTA AGCATCTCTG GGAGTCTCGC CAGCACTGTG AGTAAGGCAG CCTTTTTACC CATTTCACAG AAGGAGAAAC 000240 000241 TAAGGCTTAG TAAGGTCAAG TAACTAATTC TGCCTCCCAC ACTTCACTCC CTAGAGTTTT ATGTGTGCAT CTGTTAAAGT 000320 000321 TCTCCTTTTA TCGCCAGCAG TGTTTATGTA TAATTAAAAT AGCTCACATC TGTTGATTAA CAGTCACATT ACAACCTGCA 000400 000401 TTAACTCTTC CACTTAATGC CTGTTAAAGG ATTAGCAAAC CATTTTACAG ATGAGGAAGG CAGGGCACAG AGAATTAATG 000480 000481 TCCACACCAT GCTTATCAGT GAGTGGAGCA GGGATTCAAA CCTAGACCTT CTGGGTCTAG AGCCCTCCTC AGCCATCACC 000560 000561 TCTCATTCTC CATTAGAGTT GGTTATCATG TGAGTTGAGG CCCAAAGGTT AATGGAAGTT ATTATTCTTC TTCACCACCA 000640 000641 ATTGAACTTT TTATCTTTAC CTACTGTCCT CTTCATCCTT TTAATGCTTT GTACCCTAAA ATCCGCTTAG ATATTAACTT 000720 000721 TGCCAGTTCT TTCTTTTTGG TTACATGTGC CAGGTATACT TTGTCAAACT TTTAATTTTG GGTGTTTTGC TTTGTTTTTT 000800 000801 GTTGGTGAGA CAAGATCTCA CTCTGTCGCC CAGGCTGGAG TGCAGTGGTG CAATCTGGGC TCACTGCAAC CCCCGCCTCC 000880 000881 TGGGCATAAG CAATCTTCCT GCCTTGGCCT CCCAAGTAGC TGAGACCACA GGCACGAGCC ACCACACCCA GCTAACTACT 000960 000961 TGTAATTTTT TTGATAGAGA CAGGTCTTGC CATGTCACTC AGACTGATCT CAAAACTCCT GGGCTCAGGC GACCCACCCA 001040 001041 CCTTGGCCTC CCAAAGTGCT GGGATTATAG GTGTGAGCCA CTGCACCTGA CCCAATTTGT AATTTTGAAC CTCTTCTTAC 001120 001121 TATCCTGTTT CAGTTTTTTT TTTGTAAACA ACTATAGCTG GATTTTGTTT TCTAACCCAG TCTAAAGCAG TCTCAGATTT 001200 001201 TGTTAGAACA ACTGAAGGAT CTGACATTTG TATGTCACTT TATTCTATGT GAATGGTTTA TTTTACTCCT TTTTCCATAG 001280 001281 TTTTGATGGT TTGGGCAAAT TACTATTTAT TCTCTTTCTA ATTGTCAATC TATCATTACA GCAAATGGTT GCTTCCTGAT 001360 001361 CATTATATAG AAACAGGGTA AGCACCTGCC TCCCGCTAGG ACTCTCTCTG CTTCCTTCCG CCCTACCCAC CCCAGTAAGA 001440 001441 GCTACCCAAG AAGGCTCCTA TCCCTGCCAC CTTCCACTGA TATTTTCCTA TAAACTGTGA GACTCAACTA ACAAGGATTC 001520 001521 CCTCTCCTTC CAACTTGGGG TCCCTATTCT GATCAACTGC CATTTCATTA GGGCCTTTCT TGATGATTTC CTTCATACGT 001600 001601 AACACAAGCG GGAATATCCT CTGAATTTCG CTTGCTCGTC TGCAAAATAT ATTTCTTAGT CTGGTCAGGG AATGGTATTA 001680 001681 ATGCTCTGGT GAGGCTTCCT GGGCCCAGGC CAGCCAGAGT CCTCCGGTTT TCAGTGCTGC AAATGAGGAA TCTGCTGCCA 001760 001761 ATGTGTTTCT TTTCTTCCTC CTTTGTCAAT TATCTATTTA TTCTGCTGGG AAGCCTCTTT GATTTTATCT GTAGCTTTCA 001840 001841 AGAATGTCAC CAGGAGATGC CAAGGGTGTA TCTTTTTCTT CAATGTAACC CTGCCTGGAA CTCTAACAAC CTTTTCAATG 001920 001921 TGCAAACTCA TGCCCTCTTC TGATCAGGGA AAATTTCTAC TATTATTTAT TGATCATATT TGCCATGTCC AGACCTGCTT 002000 002001 CCTCTTCTCC TTCCACAGCC CCTAACATTC ACAGGTAGAT GAAAAGACAT CCACCAAACC TATATTTTCT TTCGTGACTT 002080 002081 CCACCTGTGT TTCTGGTTTT CTGGGAGGCC TTTGTTTCCC AGAAACAGGA AAACCATCCT CTTTTCCACT TGATGTTTTG 002160 002161 AATTTTCTAA ATTTGAAAAT CCTAGTTCTA GAACCTGTTT TCTTGGGCAG TATCTGGATT TCCCTGGGTT TTTGAAACCT 002240 002241 AACACTTGTC CAGTATGTGC CGCTTGGCTT TCCTTTTCCC TCCAGCTGGG GGTCCCTCAA GGCTACTCCA TGTCCCCAGC 002320 002321 AGCCAGGTCC AGCTGTGGGG TCCCCTTCCA GTGGGTGCAC GGTTATGCCT CTGGCCCCTG ACCTGCCCTG GGGCAGCAAT 002400 002401 AGCTTTCAGC AACCTCTGGG ACAGAGGGCA AGGGAAGAAT AGAGCAGAAA GACTCTAACC TCATCTAAGC CCACTCAGGA 002480 002481 CTCCAAGGAC AGGAATCGAT TCACACTTTC TCTTCTGACT TGTTTTTGTA GAGATAAGGT TTTGTCACGT TGCCCAGGCT 002560 002561 GGGTCTTGAA CTCCCAGACT CAAGTGATCC TCCAGCCTTG GCCTCCCAAA GTGCTAGGAT TACAGGTGTG AGCCACTGCA 002640 002641 CCCAGCCAGG TGCCTTTGTA AGAGACCTTA GCCCCCTTGC CTCTTCTGCC ATGTGAGGAC ACAGGGAATC AGAAAGTGGG 002720 002721 TCCCTTACCA GACACAAAAT CTGCTGGCAC CTTGATCTTG GACTTTGTCT CCAGAATTGT GAGAATAAAT TTCTGTTTAT 002800 002801 AAGCC |
Predicted Small Protein
Name | ENST00000399003.1_smProtein_1742:1942 |
Length | 67 |
Molecular weight | 7849.0742 |
Aromaticity | 0.19696969697 |
Instability index | 51.7878787879 |
Isoelectric point | 5.96771240234 |
Runs | 10 |
Runs residual | 0.000907276356379 |
Runs probability | 0.0317700052994 |
Amino acid sequence | MRNLLPMCFFSSSFVNYLFILLGSLFDFICSFQECHQEMPRVYLFLQCNPAWNSNNLFNV QTHALF |
Secondary structure | LLLLLLHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHEEEEELLLLLLLLHHHH HHHHLL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLL |
PiMo | iiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooooo oooooo |