ENST00000399711.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000399711.1 |
Source |
Gencode19 |
Same with |
lnc-FAM155B-1:1,NONHSAT137387 |
Classification |
intergenic |
Length |
2173 nt |
Genomic location |
chrX+:68399400..68429767 |
Exon number |
5 |
Exons |
68399400..68399488,68421320..68421475,68424175..68424292,68424734..68424870,68428095..68429767 |
Genome context |
|
Sequence |
000001 CTTCTCCCCC GCCAGCTCGC CAGCTCGGGA GCTTCTTGAG AGCAGGGTCC ATGGCAGGCT TTGCTCACCA TTGCGTGGCT 000080
000081 CCAGGCTCAT GTTTCCCTCA GACTTTTATT CATTCAAGCA GCATGTATTG GATACCTACT ATACAACAAG CATTGTTCTA 000160 000161 GGAACCAGGG ATACAGTGGC AAAAATGACA AGCCATAGAC CCTGCCCTCA TGAAACTTCA TGTAGAGGAG ACATACAGCA 000240 000241 GATCGAATCC TAGACTCACT GTCTGATCCG GAAGGCACTT TAATCATGCC TAAGAGCCTG GAGATTTATA AAGGAAGCTG 000320 000321 TAACTGGGAA GAATCCGGCC TGCTGGGAAG CTGCTTCTCC CAGGGTCTTG CTCTATTACC CCGAGTGGAG TGGAGTGGTG 000400 000401 CCATCTTGGC TCATTGCATC GTTGACCTCC CGAGCTCAAG TGATCCTCCC ACCTCAGCCT CCCACTTTTC GGGACTACAG 000480 000481 GCACACACCA CCACAGCCAG ATGGAGTCTC ACTCTGTTGC CCAGGCTTGA GTGCAGTGGC ACAATCTCGG CTCACTACAA 000560 000561 CCTCCGCCTC CTGGGTTCAA GCAATTCTCC TGTCTCAGCC TCCCAAGTAG CTGAGACTAC AGAGGCATGC CACCACACCA 000640 000641 GGCTAATTTT TGTATTTTCA GTAGAGACGG GGTTTCACCA CGTTGGTCAG GCTGGTCTCA AACTCCTGAC CTCAGGTGAT 000720 000721 CCACCTGCCT CAGCCTCTCA AAGTGCTGGG ATTACAGGCG TAAGCCACAG TGCCCGGCCC AAAAGTTGCT TTCTCCAACT 000800 000801 TTTGGGCTGA ACTCTGTCTC TTTGTGGCTT CCATCCATTG GTCACAGTGC TGCCTCTGGG GGCCACCTAA GCTCTGTCTT 000880 000881 CTCCCTCTGC CCTCCAACAG CTTCTTAGAG GTCTGAAGCA TCACCATAGC CATAACCCCT GAGTCTTCTC CAAGCAAAAC 000960 000961 AACTCCACTT CCTTCAACTG TTCTTCATGA GACCAGGGCC CCCGCTTTCT CCACAGCATG CTTTTGCCTC CCTGGTCATG 001040 001041 CTCCAGTGTG ACTCTGGTAC CCTTAATATG TGGCACACAG AGCTGACACC ATATTCCAGG GCAGTCTGTC ACCTCCTTGT 001120 001121 TCTTGAAACT TTACTTCTAT ACTGCCTACA GATGCAGCTG AAGGTTCCAT GGATGTATTT GGTCAGACCA TGCATATGAC 001200 001201 AGTCACCTCC TCACCTCTGC TCCTTGCCCT CTCACCTGGT TCCCCCTTGC CAGCCTACAT TTGAGGACTG GATCCAAGAG 001280 001281 CAAGACCTAA CATTTCTCCC TGTCGTATTT ACTTTGTAAG CTTCAGCCCC TCCTTCTAGT CTGTCAGGAA TGGGAATGTT 001360 001361 TTTGAAAACA GACTCTGAAA GCCAATGAGA TGTGCTCCTC CTGCCCACAG TTGGACCCAG GCTCCATATT TGATCAGTGA 001440 001441 ACAGCCACGT CCGCACATGT GCCACAAGGC ATTTGTCTGC AAATTCATCC GGAGACCTTG ACAGATGCCT GGAGGTCAGA 001520 001521 AATCAGCCTC CTCTATGCTG CCATGTGGCC CCAGGAGCCT GAAGGAAACA CCAAGTACAT CTAGAAGTTG ATGGTTGACC 001600 001601 GATGGGAGAG GGGGCAAGAT GCCAGTCACT CAGTCAGCCA ACCTTTCCTG AAGATTGTTG GAGGCTCCAA GTGACATAGG 001680 001681 GGATAATGCA GAGAACATTC AGAGACATCA TCTACTGCCT GTGCGCTCTG GAAGTTTCTA GTCTCACAAA AAGGAAGACC 001760 001761 AGGGAGGCCC TTAAGAAAAT ATAGCAGGCT GAATAATATC CCCCAAAGAT ATCAGGTCCT AATCCCTGGA ACCTGTAAAA 001840 001841 GTTACCTGAT TTGGAAAAAT GATCTTGGCA GATGTGATCA AGTTAAGGGT TTCTAAATGC AATCACATAA GAGGGAGGCA 001920 001921 GAGGAGACTT GAAACAGATG GAAAAAGAAA AGAAAAGACC ACGTGACCAT AGAGGCAGAG ATTGGAGTGA AGTGGCTACA 002000 002001 AGCCAAGGAA TGCTGGCAGC CACAGAAGCT GGAAAAGACA AGGACCAGAT TCTCCCTTAG AGCCTCTGGA AGGAGCATGG 002080 002081 CCCCATCAAC ACCTTGATTT TGGCCCAGTG ATACTGGCTT TAGACGTCTA GCCTCCAGAT CCGTGAGAGA ATACATTTTT 002160 002161 GTTTTCTTCA GCC |
Predicted Small Protein
Name | ENST00000399711.1_smProtein_986:1198 |
Length | 71 |
Molecular weight | 8056.6487 |
Aromaticity | 0.0857142857143 |
Instability index | 58.3328571429 |
Isoelectric point | 7.71405029297 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0276845472924 |
Amino acid sequence | MRPGPPLSPQHAFASLVMLQCDSGTLNMWHTELTPYSRAVCHLLVLETLLLYCLQMQLKV PWMYLVRPCI |
Secondary structure | LLLLLLLLHHHHHHHHHHHHLLLLLLLLHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHLL LLEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiii iiiiiiiiii |