ENST00000399711.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000399711.1

Source

Gencode19

Same with

lnc-FAM155B-1:1,NONHSAT137387

Classification

intergenic

Length

2173 nt

Genomic location

chrX+:68399400..68429767

Exon number

5

Exons

68399400..68399488,68421320..68421475,68424175..68424292,68424734..68424870,68428095..68429767

Genome context

Sequence
000001 CTTCTCCCCC GCCAGCTCGC CAGCTCGGGA GCTTCTTGAG AGCAGGGTCC ATGGCAGGCT TTGCTCACCA TTGCGTGGCT 000080
000081 CCAGGCTCAT GTTTCCCTCA GACTTTTATT CATTCAAGCA GCATGTATTG GATACCTACT ATACAACAAG CATTGTTCTA 000160
000161 GGAACCAGGG ATACAGTGGC AAAAATGACA AGCCATAGAC CCTGCCCTCA TGAAACTTCA TGTAGAGGAG ACATACAGCA 000240
000241 GATCGAATCC TAGACTCACT GTCTGATCCG GAAGGCACTT TAATCATGCC TAAGAGCCTG GAGATTTATA AAGGAAGCTG 000320
000321 TAACTGGGAA GAATCCGGCC TGCTGGGAAG CTGCTTCTCC CAGGGTCTTG CTCTATTACC CCGAGTGGAG TGGAGTGGTG 000400
000401 CCATCTTGGC TCATTGCATC GTTGACCTCC CGAGCTCAAG TGATCCTCCC ACCTCAGCCT CCCACTTTTC GGGACTACAG 000480
000481 GCACACACCA CCACAGCCAG ATGGAGTCTC ACTCTGTTGC CCAGGCTTGA GTGCAGTGGC ACAATCTCGG CTCACTACAA 000560
000561 CCTCCGCCTC CTGGGTTCAA GCAATTCTCC TGTCTCAGCC TCCCAAGTAG CTGAGACTAC AGAGGCATGC CACCACACCA 000640
000641 GGCTAATTTT TGTATTTTCA GTAGAGACGG GGTTTCACCA CGTTGGTCAG GCTGGTCTCA AACTCCTGAC CTCAGGTGAT 000720
000721 CCACCTGCCT CAGCCTCTCA AAGTGCTGGG ATTACAGGCG TAAGCCACAG TGCCCGGCCC AAAAGTTGCT TTCTCCAACT 000800
000801 TTTGGGCTGA ACTCTGTCTC TTTGTGGCTT CCATCCATTG GTCACAGTGC TGCCTCTGGG GGCCACCTAA GCTCTGTCTT 000880
000881 CTCCCTCTGC CCTCCAACAG CTTCTTAGAG GTCTGAAGCA TCACCATAGC CATAACCCCT GAGTCTTCTC CAAGCAAAAC 000960
000961 AACTCCACTT CCTTCAACTG TTCTTCATGA GACCAGGGCC CCCGCTTTCT CCACAGCATG CTTTTGCCTC CCTGGTCATG 001040
001041 CTCCAGTGTG ACTCTGGTAC CCTTAATATG TGGCACACAG AGCTGACACC ATATTCCAGG GCAGTCTGTC ACCTCCTTGT 001120
001121 TCTTGAAACT TTACTTCTAT ACTGCCTACA GATGCAGCTG AAGGTTCCAT GGATGTATTT GGTCAGACCA TGCATATGAC 001200
001201 AGTCACCTCC TCACCTCTGC TCCTTGCCCT CTCACCTGGT TCCCCCTTGC CAGCCTACAT TTGAGGACTG GATCCAAGAG 001280
001281 CAAGACCTAA CATTTCTCCC TGTCGTATTT ACTTTGTAAG CTTCAGCCCC TCCTTCTAGT CTGTCAGGAA TGGGAATGTT 001360
001361 TTTGAAAACA GACTCTGAAA GCCAATGAGA TGTGCTCCTC CTGCCCACAG TTGGACCCAG GCTCCATATT TGATCAGTGA 001440
001441 ACAGCCACGT CCGCACATGT GCCACAAGGC ATTTGTCTGC AAATTCATCC GGAGACCTTG ACAGATGCCT GGAGGTCAGA 001520
001521 AATCAGCCTC CTCTATGCTG CCATGTGGCC CCAGGAGCCT GAAGGAAACA CCAAGTACAT CTAGAAGTTG ATGGTTGACC 001600
001601 GATGGGAGAG GGGGCAAGAT GCCAGTCACT CAGTCAGCCA ACCTTTCCTG AAGATTGTTG GAGGCTCCAA GTGACATAGG 001680
001681 GGATAATGCA GAGAACATTC AGAGACATCA TCTACTGCCT GTGCGCTCTG GAAGTTTCTA GTCTCACAAA AAGGAAGACC 001760
001761 AGGGAGGCCC TTAAGAAAAT ATAGCAGGCT GAATAATATC CCCCAAAGAT ATCAGGTCCT AATCCCTGGA ACCTGTAAAA 001840
001841 GTTACCTGAT TTGGAAAAAT GATCTTGGCA GATGTGATCA AGTTAAGGGT TTCTAAATGC AATCACATAA GAGGGAGGCA 001920
001921 GAGGAGACTT GAAACAGATG GAAAAAGAAA AGAAAAGACC ACGTGACCAT AGAGGCAGAG ATTGGAGTGA AGTGGCTACA 002000
002001 AGCCAAGGAA TGCTGGCAGC CACAGAAGCT GGAAAAGACA AGGACCAGAT TCTCCCTTAG AGCCTCTGGA AGGAGCATGG 002080
002081 CCCCATCAAC ACCTTGATTT TGGCCCAGTG ATACTGGCTT TAGACGTCTA GCCTCCAGAT CCGTGAGAGA ATACATTTTT 002160
002161 GTTTTCTTCA GCC
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Predicted Small Protein

Name ENST00000399711.1_smProtein_986:1198
Length 71
Molecular weight 8056.6487
Aromaticity 0.0857142857143
Instability index 58.3328571429
Isoelectric point 7.71405029297
Runs 9
Runs residual 0.0162659123055
Runs probability 0.0276845472924
Amino acid sequence MRPGPPLSPQHAFASLVMLQCDSGTLNMWHTELTPYSRAVCHLLVLETLLLYCLQMQLKV
PWMYLVRPCI
Secondary structure LLLLLLLLHHHHHHHHHHHHLLLLLLLLHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHLL
LLEEEELLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
LLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiii
iiiiiiiiii