ENST00000412816.3

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000412816.3

Source

Gencode19

Same with

lnc-LINC00470-1:2,NONHSAT056888

Classification

intergenic

Length

2031 nt

Genomic location

chr18-:1268312..1407181

Exon number

5

Exons

1268312..1269853,1272443..1272512,1275967..1276078,1368486..1368598,1406988..1407181

Genome context

Sequence
000001 AATTTTTTGT ATTTTTAGCA GAGACGGGGT TTCACCCTGT TAGCCAGGAT GGTCTCATCT CCTGACCTCG TGATCCGCCC 000080
000081 GCCTAGGCCT CCCAAAGTGC TGGGATTACA GGCGTGAGCC ACCGCGCCCG GCCTAATAAA GGACAATTTT TAATAGCCAC 000160
000161 TGGACTATTT AAGTGATCTC TTCTGTCAGT TTCTTTTACC ATCAGAGGAC ACAGCAGCAA GGTGCCATCC TAGAAGCAGA 000240
000241 GAGCAGACCC TTACCAGACA ACCAACCAGC TGGTGCCATG ATCTTGGACT TCTCGGCCTC CAGAACTCAA CAACAAGAAA 000320
000321 CAAATTTATT AGCTAACCTA ACCACTAATG ACGCAAGAGA CAATTCTAAG GACTTTCAAA ACAGCAAAGT AGGAGCAGCT 000400
000401 GCTACCTCTA GGGATGAGGG ATGCAATTGT CCAATTATTG GTGAAATTGT CATTTCATGC TATTGGCTAT TTGAAATTCC 000480
000481 TCCTCTAATT TCAGAATAAA TCACTGAAAT TGACATCGGC CAGTCTGAAT TTCAAGAAAT TACCTGCTGA AGACAAGAGG 000560
000561 GATCTCTTCT TCAGATTTGC AGTCTGGGGA AGACACAGCC TCTACTGTAC TTTAGAACCT GAGATATGGT GGTGGAGGGA 000640
000641 GCCCTGGGTC GAGTGGTAAG ATTCACCCTT AGGTTAGTAT TGACGTAAGG TGACGAGGAG CTGTAGACAA AAGATTGTAA 000720
000721 CCATAAGAAC TTCATAGTTT TTGTATTTTC ACCGAGCTTA TATTTGGTGT GTTTTTTGTC TTTTCTTTAT GATTATCAAT 000800
000801 AAAATGCTTG AAAGGAGATG AGGTTGGGGA ATAATTTTTG GGAATACCAC AAAAGACACT TTTGTGATGG AAATCCTTAA 000880
000881 AAAGACACAA TCCATTACCT CATTGGGTTC AAAAGGCAAT TGTGAACTAC TGTGGAGTTT GGAAAGAAGC AATGAGGTAA 000960
000961 TCAAGGATAC TGTTGACAAT CTAGCTTATC CTATGGATGG AAGGAAATTG AAACTAATGG AGGCGAGGCT GGTAAAACAA 001040
001041 TAGGGTTTGA GACAATTCTG TGGCATTAGA AATGAAAGAG GAAGGTGAAT CCGGGAGACG GAGCTTGCAG TGAGCTGAGA 001120
001121 TCGCGCCACT GCACTCCAGC CTGGGCGACA GAGCGAGACT CCATCTCAAA AAAAAAAAAA AAGAAAGAAA GAAAAGAAAG 001200
001201 AGGAAGTAAT AATCTGTGAA ATTTTTCCTT AGGAACTTAT TGGCAATTTA AAAATGAATT TGTTAAGCCA TGCTGGTTCT 001280
001281 GACCCAAAAG CCATTCCCCA GCCTTCCTCA CTCCCCTCTT TCACTACTGG CAGAGATTGT CTCTCATTTT ACAAGCTGAA 001360
001361 AATGCCAGAT GCTTGCTTTT ACAGTCTTCC TTACACCCAG AGCATGTGCA TATGTTTAAA CGGTCAAGAA GAAGTCATAA 001440
001441 CATGGGTGTC TGGGAGAGCT TTTATCCCAC AAAAACAACA CTTCACTCAA AAAACAAACC AAACAAAGAA AAATTCTCCT 001520
001521 TCCTGCCATT GGATGTGAGG CTCAGACCTC TAGTAACCAT TTTGTGACCA CAAAGCAACA AGCCTGAGGA AAAGTCCTAC 001600
001601 ACGCTGAGCA ACAGGCAGAA ATATTGCCAT CGCTGAGTTG CAGAAACAAA TCTAGAGATG TTTTGCTTCT GTAATTATTT 001680
001681 TTTATGGGAG ATTACAAGTG GGTTTACTGT TCACTTTTCA AATCTTATTT CTCTATGATG TTTAGCTTGG GTAAATTTTA 001760
001761 CCTTAAATCC ACTTTTTTAT GTAAGGTAAC ATATTTGTCG GTTTCAAGGA TTAAGATGTG GGCATACTTG GAGGCCATTA 001840
001841 TTTTGCCCAC CACAGGTGAA AAAGGAAGTG TTATTCTTAA ATCATTTGGA AGGATCTCTG TGTAAATGCA AGAGCGAGAC 001920
001921 AAGAAAATGC TGTCATTCTT TTGATATGGA CTCGAATTTC CACTTCATGG TTGTCTGCTT CCTTTTTAGA GTATTATTTA 002000
002001 TCCTCCTAAT AAAAAGAAAG TGAAATTTCC C
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Predicted Small Protein

Name ENST00000412816.3_smProtein_1253:1537
Length 95
Molecular weight 10632.1342
Aromaticity 0.106382978723
Instability index 64.4778723404
Isoelectric point 8.91461181641
Runs 12
Runs residual 0.00115633672525
Runs probability 0.0353220867927
Amino acid sequence MNLLSHAGSDPKAIPQPSSLPSFTTGRDCLSFYKLKMPDACFYSLPYTQSMCICLNGQEE
VITWVSGRAFIPQKQHFTQKTNQTKKNSPSCHWM
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHEELLLLLEEEELLLLLLEEEEEELLLEE
EEEEEELLEEELLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -