ENST00000415062.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000415062.1 |
Source |
Gencode19 |
Same with |
lnc-C9orf116-1:1 |
Classification |
antisense |
Length |
1117 nt |
Genomic location |
chr9-:138395119..138398293 |
Exon number |
3 |
Exons |
138395119..138395547,138396082..138396165,138397690..138398293 |
Genome context |
|
Sequence |
000001 CCACCATCTG GGACACCAGC TGGTCCAGGC ACAGCCTTGC CACAGTCCAG AGAAGGCCAC CTCTAATGGG GCCTGCAGGC 000080
000081 ATTGTGGCCA CAGGAGGAAA GGGCCGGGGG GCCCCTCTCC CCACTCCTGG GGCAGCTCCC TTGCCCTTCC CCAGCCTCAG 000160 000161 GCACTCTCAT CATCTCCGTT GGCCTCTTCT GGGGGCTCTT GGGGTTCATC TCCAGGGTGG AAAACTTGGA GGGCCCCTCC 000240 000241 TGGCAGAGTC AAGGATGGGG TCAGCGAGAC CCCATCCCCT CAGCCCTCAA CCTTTGTTTC ACCCAGAGCC CCTCTGAATC 000320 000321 CTGGGAGCTG GCTCTTTCCA CTCCCCGAGG GGGCCCTCAG GCCCACCCTG GCTGTCCCAG CATGGCCCCC GCGGCTTCTG 000400 000401 CGCTGCACCC TTCCCGTCCC TCCCTGCTCC TCATGGTCAC TAGTGCCTGC TTATCCACTG GGTCATCCCC TCGGCCAGGG 000480 000481 CCCCTCCTGC CCTGGAAGCC CAGCAAGCGC CCACTCGTAG CTCCTCAGCG GGTCCTCGCC GGCCTGTGCC AGGTGCAGGG 000560 000561 GCCAGTGGGA GGACAACAGG AGCCACGCAG GCCATCAGCG CAAGAGCAAA CGCACATGGC AACGTTGGTC CGCTCAGCCA 000640 000641 CTGGTTCTGT GGTGGAACGG TGGATGTCTG CACTGTGACA TCAGCTGAGT ACGAGAACTG CCGGTTGCGG CTTATAAACA 000720 000721 AGATGATGCC CTTGCGGTAG GCCATGTGGG CGGTGAAGTT CAAGGCCAGC TGGAGGTGCG TGGCTGTCTG TTCCAGGTCG 000800 000801 ATGATGTCGT GGTCCAGGCG GCTCCCAAAG ATGTACGGCT CCATAAACCT GCCAGAGACC CCACCAAGGC AAGGGGGATG 000880 000881 AGAGTTCACG GGGCCATCTC CACTGGCTCC TTGCAGGAAC ACAGACGCCC ACCAGGGACT CCCGGGCTCC TCTGTGGGGG 000960 000961 CACTATGGGC TGGGAAGCAC AATTTGCAAC GCTCCCCGTG TGCATGGACA GCAGTGCAGA CCCATCCAGG CCACCCCTCT 001040 001041 GCATGCCTCG TCTCGTGGCT TAACCCCTCC TACCCTCTAC CTCTTCCCGA AGGAATCCTA ATAGAACTGA CCCCATA |
Predicted Small Protein
Name | ENST00000415062.1_smProtein_65:316 |
Length | 84 |
Molecular weight | 8492.8498 |
Aromaticity | 0.0361445783133 |
Instability index | 60.0590361446 |
Isoelectric point | 11.8342895508 |
Runs | 9 |
Runs residual | 0.031593038822 |
Runs probability | 0.0374590276551 |
Amino acid sequence | MGPAGIVATGGKGRGAPLPTPGAAPLPFPSLRHSHHLRWPLLGALGVHLQGGKLGGPLLA ESRMGSARPHPLSPQPLFHPEPL |
Secondary structure | LLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHLLEELLLLLLLLLEEE ELLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |