ENST00000417805.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000417805.1

Source

Gencode19

Same with

lnc-C1orf31-6:1

Classification

intergenic

Length

1373 nt

Genomic location

chr1+:234782035..234796670

Exon number

4

Exons

234782035..234782251,234790972..234791210,234791854..234791979,234795880..234796670

Genome context

Sequence
000001 AAGATGTTAT ACTTCACAGT AAGGGCTAGT TTCTAAACAT GAAAGAACAC ATAGCTTATG TAACATGACA TTTGTTGGAG 000080
000081 AATATGCCCT AGAAAATCAT GATATCACAG ATATATACTA AATATCTGAA GGAGATTACG GAGAAAACAT TTCCAGCGGA 000160
000161 GGAGTTCTTT AATATAGACA GAGCTTGTTT CAGAATTGGT ATCTTCCTGA ATATTTGGCT GCTTGGAAAA AGTTACATTG 000240
000241 GTGCCGGGAT TCAGCCCTTG CCTGGACAGA GGTGGCCGCT AGAGTCATCA GCATGGACAC TGGCACCAGT GACTACATAG 000320
000321 GTCCCAGGAT CGTAGCCAGC CACCTCGGGT GCCTCCGGAG ACCACTTGAG AAGTGCAGAG ACTGTGGGCC AGCCCCTCAT 000400
000401 TCTTGTCTGA GACAGTGATG CCCTCCCCAC TCAGTAATTA TGCACAGCTA GCAGAGCTCT GAAATGAATG GCTTCATTTA 000480
000481 ATCACAAAAG AAGGAATACC AGCAAGACCA CCCAGGCCCC AGCTCCGGTT TTTCCTGAAG AATTTGGCCG CATCTCCCTT 000560
000561 TTTGAAGGCA GAGTTTCATC TTGCTCCAGG GAGAAGCAAC TTCCTGGGCA TGCGTGTTAA GAGACAAAAA ATGATGACGT 000640
000641 TTGATGACCA CTCCACCAGA AAAGGGAAGA AAGCCTGAGG GGCCTGCGTG GACCTCCCTA AACACACTGC GCATGCTCCA 000720
000721 TTCCAAACGG TATGGCGAGC ACTGCGCATG CGGGAAACCC ACCCTGTAAG GGAAGAATCC TGGGAAAGAG GCAAGCCTAT 000800
000801 GAAGTCCCAG GATCAAGGTT AAAGACCCTC TTTTTTACTG TCTTCTTGTG CTCTCTTTTC TCTCTTGGAC CTTCAGGCGC 000880
000881 CTGCTTGGGT CTCTTTCAAG CGAATTTTGC TTTCTTTCCT GTTCTAAAGC CTTTTAACTA AACTTCCACT CCTGCTCTGA 000960
000961 AACTTGCTCT CTTTTTCTGC CTTAACGCCC CTCAGTCGAA TTCTTTCTTC TGAGGAGGCA AGGACTGAAG TTGCTGTGGA 001040
001041 CCCATAGGGA TTCGCCATTG GTAACTCGGG GTAACTCGGC TCTCTTCCAC TGCTGACGTA TGTAGCAAGT CCTGTCTTCG 001120
001121 GGTTGGCAGG CACCACGGCT GACACCACAT GCGCAGAGAG AGGGGAAAGA CCAAGAAGTG ACTCATGACA TCACCCTCGT 001200
001201 CTCTGAAAGA CAAGATGTTG GTCTCCTCAG GTGCCGTGCA GTCTTCAGTG TTGGCTGCAG CCACAGCCCC TGCAATGCAG 001280
001281 ACCAGGATGA GGGAAAGCCG CTGGAAGAGG CCTACAGCAT TTTTTATTAG TAAATCCAGA GGACGTGTTA TATAAAGTGT 001360
001361 AAGACAACCA CCA
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Predicted Small Protein

Name ENST00000417805.1_smProtein_98:319
Length 74
Molecular weight 8381.6762
Aromaticity 0.150684931507
Instability index 61.402739726
Isoelectric point 7.87042236328
Runs 9
Runs residual 0.0208572691118
Runs probability 0.0251820447899
Amino acid sequence MISQIYTKYLKEITEKTFPAEEFFNIDRACFRIGIFLNIWLLGKSYIGAGIQPLPGQRWP
LESSAWTLAPVTT
Secondary structure LHHHHHHHHHHHHHHLLLLHHHHHLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL
LLLLLEELLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
LLLLLLLLLLLLL
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