ENST00000418428.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000418428.2 |
Source |
Gencode19 |
Same with |
lnc-SCIN-2:1,NONHSAT119229 |
Classification |
intergenic |
Length |
1094 nt |
Genomic location |
chr7+:12536055..12581536 |
Exon number |
7 |
Exons |
12536055..12536265,12565446..12565530,12568528..12568670,12570639..12570718,12577936..12578082,12580546..12580869,12581433..12581536 |
Genome context |
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Sequence |
000001 GTTCGTCCAT CCAAACTCCT TTCCCTTCTT CTCCCCTTTT ATTAAGTACT CTACTGTCAT CAAGGGTTAG TAATGATCTC 000080
000081 AGATGCTCTA AGAAATCTTT GGAGACATTC TCAAGCTTCA GAGACCTTCC TCTCACTAAT TTCTCATGAG AGTAACCGTC 000160 000161 AGGACAAATC ACTTGGCATT TAGCACCTTA TCTCGTGATG TATTCTTATA GTACCAACCT GGTTTACCAA ACTTTGAGAC 000240 000241 AACTTATGAA AAGGACCCCT TTGGATTAAA ATTTAAATCA CAACACTTAA GTACAGTACA TGGGTACCAG TTACCGAAAG 000320 000321 ATGATAAACA GAAGACTAGT ACAGAAAGAT TTATCACCCA CAAGCATTGT GAATGCACCT GGGATTCAAA ACTAATTTTG 000400 000401 ACGAAAGCCC CATGGCCTGT TAGATCTGCT TCATATACAA GACATAGAAG GCAGCGTGAT GCATACAGTG CATTTATGGA 000480 000481 TCGTGTGGAA GAAAAGTTTA CAAAGATATG CAAGAGCAGC TCCAGGATCT GGGGAAGAGA ACGTTCTGTT GTTTCTCTCT 000560 000561 TTCTGCACCT GTCTCAATCA CACTCCATTG CTTCTTGGTC TGCCTTTTAT CTCCAAGGTG TTGGTGTCCA GAGGAGAAAT 000640 000641 GGAAGAAACA GGGGCAAAAA GCTCAGATAG CTGATGGACC AAAACAGCAT AGGGCTTCCT GAACTCTGGC CTGAATGTTC 000720 000721 ATCTCCCGTG CATTTCCCAG TGAGAACATT GATGAATTCT GGCACCTTCC TGGATTCTAC AGAAATCTGC ACTCTCCCAG 000800 000801 AGGCATGAGA AAGTGCTAAA ACAACAAATG AAAGTTGCAT AATTTGAAAT TCCCTTGTTA CCACAGGGAT CAGAATCCAA 000880 000881 TCATAAGGCT TTTGATTTAG TTTGTGAAAG TTAGATCTTG CAACTATGAG TGGAAATGCT GATAATGTGC TTTCTGTTAA 000960 000961 TGTCCAAAGT TAAAGATGCT CTAGTCTCAG TTTTTTCTAA TACACTTTAA GAAGCTTCTC TGAGACACTC AAGTATATCA 001040 001041 AAAGAGAGAA GATCTCCAAG TAACAGAAAT AATAAATGTC CTTCTTAAAG AACA |
Predicted Small Protein
Name | ENST00000418428.2_smProtein_458:673 |
Length | 72 |
Molecular weight | 7902.115 |
Aromaticity | 0.0845070422535 |
Instability index | 50.6633802817 |
Isoelectric point | 7.84759521484 |
Runs | 12 |
Runs residual | 0.0204595997035 |
Runs probability | 0.0709974680563 |
Amino acid sequence | MHTVHLWIVWKKSLQRYARAAPGSGEENVLLFLSFCTCLNHTPLLLGLPFISKVLVSRGE MEETGAKSSDS |
Secondary structure | LLEEEEEEEHHHHHHHHHHHLLLLLHHHHEEEEHHHHHLLLLLLLLLLLLEEEEEEELLL EEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiii iiiiiiiiiii |