ENST00000420508.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000420508.1 |
Source |
Gencode19 |
Same with |
lnc-POM121L7-1:1,NONHSAT083632 |
Classification |
intergenic |
Length |
4833 nt |
Genomic location |
chr22-:21468896..21478740 |
Exon number |
6 |
Exons |
21468896..21470476,21471369..21472283,21472941..21473069,21475103..21475209,21476265..21476640,21477016..21478740 |
Genome context |
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Sequence |
000001 TACAAGCCTG TAGGCCCAGC TACTTGGAAG ACTGAGGCAG GAGAATCACT TTAAGCGGGA GGCAGAGGTT GCAGTGAGCC 000080
000081 AATCTCAAAA AAGAAAGAAA AAAAAAAAGA AAAACATATG ATGCTGGAGC ATCTCGGCCT CAATACCTGC ATGAGCACAG 000160 000161 TCATGTCCAG GCCAGGGCTG CTGGTCGAGG TCCGGCCCCA TCTCTTCCAG CAGAAAGGGA GTAAGCTTGC AGGGAGGCTG 000240 000241 GGGGACAAGA TCCCAGGATC TCAGCCTCCG CTCATGGATC AGCTCTGAGA CCCCGAGTGA GCTGGGGGTG CTCTGTGTGC 000320 000321 ACTGGTTTCC CCAGCTGTCA AGTAAAGGGA TTGGATGAGG AAGTCTTGTC AAGGTGGAAT GATCTCAGAT TTGGGGCAGC 000400 000401 AGTGAATGAT CCCGCTCCCT GGGCCATGCC AGTGGCCCGG CCTCGGCTGA ACACAGCCCC AACACTCTGG AATGGGGATG 000480 000481 AGGGGGCAGT CAGCTCTTGC TCCTAGTAAG AGAGATGCAA CAGGGCTCTG TGGCTGAGCT GGGTGCCTTG CCTCACACCT 000560 000561 GTAATCCCAA CCTTTGAGAG GCCAAGGCAG GAGGATTGCT CGAGGCCGGG AATTTTGAGA ATAGCCTGGA CAACATAGCC 000640 000641 AGACCCCATG TCTACAAAAT AATAAGAAAA CACACAGCTA TAGTCCAAGC TACTTGGCAG GCTGAGGCAG GAAGGTCCCT 000720 000721 TGTGTCCAGG AATTGGAGGC TGCATTGAGC TATAATCGCA CCACTGCACT CCAGCTTGGG TGACAAAGTG AGACCCTGTC 000800 000801 TCTAAAAGAA AAAAAAATCG GCCTGTGAGC ATGGGCTTGA TTTTCAAACA GGACCCGGAG GGTAGGGACA GACAGTGCTG 000880 000881 TCACCCTTAG GTGCTGAACA CTCAGAAACG GGCCAGCGGC AGCCCTTCCC TCACCTGCAG ACACCAGATT GGGCAGAACA 000960 000961 GCACGTGGCA CTTGCAGCTC TTGCAGTGAG GGCAGAACCC AGTGTCAACC CTTCTGCCTG TGGAAGGGGC TGCTGAGGCC 001040 001041 TGCGGAGAGG CCAGGGTGGA GGCTCGTCCC CTTGTCCAGC CCTTGGCGTG GTCTCCACCA GGTCCCCAGC CCACCAGTGC 001120 001121 AGGGCGCCCC TGAGCCTGCT GCTGCCACGG GCCCTGTCTC TACCCAGGAC GTCCCCACAC CCTCGCAGTG TCAGGGAAAT 001200 001201 GATCATGGTG GCGGTGACAC TCCGCAGGCA GGGCTGCTGA GAGAAGCTGA GAAGGGTCAC ACCGCAGGCA GGGGCCCGTG 001280 001281 TGACAAGCCC CTCTCACCCC GAGAGAGCTG ACCAGGCAGC TCACGAGCAG AGCCACATCC CGGGAGTCCG AGAAAGGTCC 001360 001361 TGGCTGGGCT CAGCCACCTC ATTGGCCACG GGCAGCCTTT GTCGTGTGAG CCTTGCTCTC CTGGGGAGGC TCAGGCTGAC 001440 001441 GGCTGATGTG GGCATTGCCG AAGGTAACCT GTGGCCCAGT GTATATGGCC GGGTCTCCTC AAGCTGCATT CATTCAAGTA 001520 001521 GGACCCAGGG TGCATGCCCA TCTCCAGCCC AGGGCAGCTC CCCTGTAAGC TGGGTGAGCT ACTGAAGCCA AGGCGGGAGG 001600 001601 CAGCTGACAA CACCCACAGC CCATGCGGAG GTGGTGGAAA GGCTGGACTC AGCAGCAACA CCAAATCCTG GACCAGGCAG 001680 001681 AAACCACCCA AGACTGAGGG GCTCGTGCCA GAGCGGTGGC CACAGCCCCA CCCCACCGGC TCAGGGGTTC TTCCCAGCGG 001760 001761 CGCTGATCAT GAAGTCAACA TGCACGCAAG TCGTCTCAGG AAACTTCTTA ATGAAAGTGT CGGCCACGGT GGTGTGTAGG 001840 001841 TGGCTGAGCT CAGATTGCAG CTGCTAAGAC ACCAGCCACT TACCAAGAGA AAGCCAGGCT GCTTCAAACC CAGGGCCCAC 001920 001921 GGCAAAAAAG CATCACTTCC GGCCGGGGAG TCTGGAAGCC ACGCCTTGTG GGAGGTCACA CTGGCATCTA GGCCTTCGCC 002000 002001 TGCATTGCAG AAGGAGAGCC GGGTCCCCCT CCTGGAGAAC GCTGCGTTCC CCAGCCCCAC ACCGGCTTTG CCACCACACA 002080 002081 GGCTGTTGAG GCAGGAGGCG GAGACTTCAG AACCCACTCC TGAGAACAGC GGAGCCAGGC GCTTAGAGGA AGACCAAATG 002160 002161 CTGCCAGGAC ACGGATTGTC CAGGGATTAC ATTCCAGCAT CTTATTAGAG GACCGAAGCA GAGGGTGCTG TTTCAACGCC 002240 002241 ACCACCAGGA GAGAGGCAGA GGGGCTGTGC CGTGCTAGAG TCCTCAGGGA GGGAGTGACC TCGACCCTGG CTGTGCTGCA 002320 002321 AGCTGACTCC AGCCTTGGGG TCAGCAGCAC CCGGCAAACA GCAGCAGGAG GAGCCGCTAG AGCAGCTGCT CATGGGCAGA 002400 002401 GCTGCCCTCG GGCAACTCCT GCCACCACCC CCTCCCCAGG GAGCCCAAGG CAGGGGAGGC TCAGCATGGA ATGAAACAGG 002480 002481 GGAGTGAGGG ACACAAGGAG GTGGGAAGTG GGAGGGTCCC AGCCCCACCA AGTACGCAGA GACCCCCTCG ACATCCTGGA 002560 002561 CACCACAGGG GCACCTGCAG GCTGGGAGAC CAGGTCCTCT GTGCATGGGC CCGGGAGGCA GACCTGCCCT AAGGGTGATG 002640 002641 CACAGGCTAC AGGTGCTGCA CGCTCCAGCG CCCACTCTAG ACATCAGCCT CCAGGTTGAC TAAGGGTCAG GTCATGTTTG 002720 002721 AAACCATGCT TGGCTGGACC AGGACCCATG GCAAGAGCAC CTGGGCACCA GTGTTTAGCC CTGGTCTGCA GGAAGGAGGA 002800 002801 CAGCAGACTT TAGGACCCCA CAGCACGGCA GTGCTGACCA TTTCACCCAC TTGGCCTCCT TGAGAAATAT GGATGGGGAG 002880 002881 CCCTCTGGGG ATGGGCAAGG CCTTCCAGGA TAGGCTCAGT TTTGGTCCCC TGCTTTTTGA GGTTGGGTTA AAATTCCGAC 002960 002961 CATGGCAGAG GAAGCACAGC TCGGGTTCCC ACACCTCACT TTTCACAGCC TCTGAGGGCA GCAGTGCACG TGGAGGAGAC 003040 003041 GTCTCCCATG AGGCCAAGGC CTCCAGTGCT CACCGATGCC CTCTGCGAAG TTGGGGTAGA ACTCGTCAGT GAAGAGGGGC 003120 003121 TCGGGCAGCT CACGGAAGTA CAGCTTCAGC ATGCCTGCGA TGGCGTTCAC GTCCATCTCG CTCATCATCA CTGACACGTC 003200 003201 CTTGTTATCT GGAAAGAGCA CGGAAATGCA GCGGCCTCCT TGAAGATCCT GATAAATGAA GAAAAGACAC AGAGAAGGAT 003280 003281 GTGACATGCC TGGGCCATGG AGCACTCTGA GATCTCATCG TGGACACCAC TGCCCACACC TCCATCCCGT CCTGCGCAGG 003360 003361 CCGACACTCA CTGACGTTGA AGCCTGCCTT CAGTGCCTGG ATGTCTGCGG CCACCCCAGA CATGCGGTAG ATGCCCACCT 003440 003441 CCTCCATGCC TCGGCGCTCG ATCTCCTCCA CGCACTGACG CACGATGTAG GGCACCTTGG ACCTCTCTCT CCTGCGGGAG 003520 003521 GAGGGAATGT TCTCAGTGTC CTAACAGCCC TGCTTGGGCC ATAACACAGG AGACCTGCTC CCTATCTGCG CACCCGGAGG 003600 003601 TGGGGTGAGG ACGGTGACGA AGGTACCCAG GTCTGGGGCT GCACACAGAG CCTTCTGCAT GCCTGTCCTC CCTCTGCAAG 003680 003681 CTCTGTCCTC ATTGCATGTA CTTTCTCAGG AACCTTTCAA GCGGCCAGAA CCCCTGCGAA TCACACATGA CCTTTGTGGG 003760 003761 AAGGTCAGGA GGCCTGTCTA AGTCAAGTCA GCACGGGAAG GGCATCTGAC AGATTCCAGG CCTGGGGTTA GCAGCCTGTG 003840 003841 CCCCCGGCTG GGAGGTCAGA CCCGGTGTTG GTCCTGCCAC CCACGTGCTG TGTGAGAGGA GAATCCCTGA CCCCTGCCCT 003920 003921 GGGCCTTAAC ACACATCCGA CGAATGAATG AAGGGTTGCC TCAGCACCGG TGCTCCAAGT CCTGCGATGC TAAGTGCTTT 004000 004001 TCTCCTCTGA GTCTTAGCAA TGGACAATTC CAATACCTCC ACACAGGACA CTAGAGTAAG AATCCTTCAC AGTTAGAACG 004080 004081 CAGTGCTGTG CGGAGGCCTT AACTTGAGTT CTGTTTTGCA CCTGGATTTA CCAGCACATC AAAGCTGCTT CGCAAGCCCC 004160 004161 CTCATCAGCA GGGCTTATGT GGGGGAGCTG CTGATGGAGT CCTCGCTGCT CATGCCCACA GCCCTCCCAG AGTGCTATGC 004240 004241 GAGTGGCTGC CGTGCAGTTG GGGGTGGGGC GTGGTGTTTA GACACAGATA GGAGTCCAGG GTATGACTGA TGGAGGCCCC 004320 004321 GGCCCACGTG ACCAGCAAGG TCAGAGGCCC AGCCAGATTC CATCCTGGGG AAGCAAATGA ATTCTCAGAG GAAGTGGTCT 004400 004401 GTGTCTGTAT GAACTGCTCT CAAACCAACA AATAGGCTTC TCTTGGCAAC TGACTCGTGA CAAAGGGTTC AAGATTGTTT 004480 004481 GAAAAAAAAA AAAAAGGGGG GGAACAGGGA GGCAGTAGGT CCTGGAAAAG TAAATTCTTT ATTTTACAAT AAGAAAGTGA 004560 004561 TTACATATTT TATTTTTTTT ACAATGGTGG AAAATTAGAA GTGATTGTGA AAATGATGTC TACCCGCCTT GCTGATGAGT 004640 004641 AGGATGTGAT TTGGCTCTTT AGGAAACTGA ATTTGCAGAA CTTAAGAATA TTGATTTATA AAGGGCATGG CCATTGACCC 004720 004721 AGTCCATCTT ATGCAAATCT GGATGCCATA AATAATATTT AAAAATGAAA GTATTGGGGT GGAGGTTGCA GTGAGCGGAG 004800 004801 ATCGCCCCAC TACACTCCAG CCTGGTCAAC AGA |
Predicted Small Protein
Name | ENST00000420508.1_smProtein_3047:3193 |
Length | 49 |
Molecular weight | 5258.9265 |
Aromaticity | 0.0 |
Instability index | 53.9375 |
Isoelectric point | 5.49053955078 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0337985043867 |
Amino acid sequence | MRPRPPVLTDALCEVGVELVSEEGLGQLTEVQLQHACDGVHVHLAHHH |
Secondary structure | LLLLLLLLHHHHHHLLEEEELLLLLLHHHHHHHHHHLLLLEEEELLLL |
PRMN | - |
PiMo | - |