ENST00000420508.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000420508.1

Source

Gencode19

Same with

lnc-POM121L7-1:1,NONHSAT083632

Classification

intergenic

Length

4833 nt

Genomic location

chr22-:21468896..21478740

Exon number

6

Exons

21468896..21470476,21471369..21472283,21472941..21473069,21475103..21475209,21476265..21476640,21477016..21478740

Genome context

Sequence
000001 TACAAGCCTG TAGGCCCAGC TACTTGGAAG ACTGAGGCAG GAGAATCACT TTAAGCGGGA GGCAGAGGTT GCAGTGAGCC 000080
000081 AATCTCAAAA AAGAAAGAAA AAAAAAAAGA AAAACATATG ATGCTGGAGC ATCTCGGCCT CAATACCTGC ATGAGCACAG 000160
000161 TCATGTCCAG GCCAGGGCTG CTGGTCGAGG TCCGGCCCCA TCTCTTCCAG CAGAAAGGGA GTAAGCTTGC AGGGAGGCTG 000240
000241 GGGGACAAGA TCCCAGGATC TCAGCCTCCG CTCATGGATC AGCTCTGAGA CCCCGAGTGA GCTGGGGGTG CTCTGTGTGC 000320
000321 ACTGGTTTCC CCAGCTGTCA AGTAAAGGGA TTGGATGAGG AAGTCTTGTC AAGGTGGAAT GATCTCAGAT TTGGGGCAGC 000400
000401 AGTGAATGAT CCCGCTCCCT GGGCCATGCC AGTGGCCCGG CCTCGGCTGA ACACAGCCCC AACACTCTGG AATGGGGATG 000480
000481 AGGGGGCAGT CAGCTCTTGC TCCTAGTAAG AGAGATGCAA CAGGGCTCTG TGGCTGAGCT GGGTGCCTTG CCTCACACCT 000560
000561 GTAATCCCAA CCTTTGAGAG GCCAAGGCAG GAGGATTGCT CGAGGCCGGG AATTTTGAGA ATAGCCTGGA CAACATAGCC 000640
000641 AGACCCCATG TCTACAAAAT AATAAGAAAA CACACAGCTA TAGTCCAAGC TACTTGGCAG GCTGAGGCAG GAAGGTCCCT 000720
000721 TGTGTCCAGG AATTGGAGGC TGCATTGAGC TATAATCGCA CCACTGCACT CCAGCTTGGG TGACAAAGTG AGACCCTGTC 000800
000801 TCTAAAAGAA AAAAAAATCG GCCTGTGAGC ATGGGCTTGA TTTTCAAACA GGACCCGGAG GGTAGGGACA GACAGTGCTG 000880
000881 TCACCCTTAG GTGCTGAACA CTCAGAAACG GGCCAGCGGC AGCCCTTCCC TCACCTGCAG ACACCAGATT GGGCAGAACA 000960
000961 GCACGTGGCA CTTGCAGCTC TTGCAGTGAG GGCAGAACCC AGTGTCAACC CTTCTGCCTG TGGAAGGGGC TGCTGAGGCC 001040
001041 TGCGGAGAGG CCAGGGTGGA GGCTCGTCCC CTTGTCCAGC CCTTGGCGTG GTCTCCACCA GGTCCCCAGC CCACCAGTGC 001120
001121 AGGGCGCCCC TGAGCCTGCT GCTGCCACGG GCCCTGTCTC TACCCAGGAC GTCCCCACAC CCTCGCAGTG TCAGGGAAAT 001200
001201 GATCATGGTG GCGGTGACAC TCCGCAGGCA GGGCTGCTGA GAGAAGCTGA GAAGGGTCAC ACCGCAGGCA GGGGCCCGTG 001280
001281 TGACAAGCCC CTCTCACCCC GAGAGAGCTG ACCAGGCAGC TCACGAGCAG AGCCACATCC CGGGAGTCCG AGAAAGGTCC 001360
001361 TGGCTGGGCT CAGCCACCTC ATTGGCCACG GGCAGCCTTT GTCGTGTGAG CCTTGCTCTC CTGGGGAGGC TCAGGCTGAC 001440
001441 GGCTGATGTG GGCATTGCCG AAGGTAACCT GTGGCCCAGT GTATATGGCC GGGTCTCCTC AAGCTGCATT CATTCAAGTA 001520
001521 GGACCCAGGG TGCATGCCCA TCTCCAGCCC AGGGCAGCTC CCCTGTAAGC TGGGTGAGCT ACTGAAGCCA AGGCGGGAGG 001600
001601 CAGCTGACAA CACCCACAGC CCATGCGGAG GTGGTGGAAA GGCTGGACTC AGCAGCAACA CCAAATCCTG GACCAGGCAG 001680
001681 AAACCACCCA AGACTGAGGG GCTCGTGCCA GAGCGGTGGC CACAGCCCCA CCCCACCGGC TCAGGGGTTC TTCCCAGCGG 001760
001761 CGCTGATCAT GAAGTCAACA TGCACGCAAG TCGTCTCAGG AAACTTCTTA ATGAAAGTGT CGGCCACGGT GGTGTGTAGG 001840
001841 TGGCTGAGCT CAGATTGCAG CTGCTAAGAC ACCAGCCACT TACCAAGAGA AAGCCAGGCT GCTTCAAACC CAGGGCCCAC 001920
001921 GGCAAAAAAG CATCACTTCC GGCCGGGGAG TCTGGAAGCC ACGCCTTGTG GGAGGTCACA CTGGCATCTA GGCCTTCGCC 002000
002001 TGCATTGCAG AAGGAGAGCC GGGTCCCCCT CCTGGAGAAC GCTGCGTTCC CCAGCCCCAC ACCGGCTTTG CCACCACACA 002080
002081 GGCTGTTGAG GCAGGAGGCG GAGACTTCAG AACCCACTCC TGAGAACAGC GGAGCCAGGC GCTTAGAGGA AGACCAAATG 002160
002161 CTGCCAGGAC ACGGATTGTC CAGGGATTAC ATTCCAGCAT CTTATTAGAG GACCGAAGCA GAGGGTGCTG TTTCAACGCC 002240
002241 ACCACCAGGA GAGAGGCAGA GGGGCTGTGC CGTGCTAGAG TCCTCAGGGA GGGAGTGACC TCGACCCTGG CTGTGCTGCA 002320
002321 AGCTGACTCC AGCCTTGGGG TCAGCAGCAC CCGGCAAACA GCAGCAGGAG GAGCCGCTAG AGCAGCTGCT CATGGGCAGA 002400
002401 GCTGCCCTCG GGCAACTCCT GCCACCACCC CCTCCCCAGG GAGCCCAAGG CAGGGGAGGC TCAGCATGGA ATGAAACAGG 002480
002481 GGAGTGAGGG ACACAAGGAG GTGGGAAGTG GGAGGGTCCC AGCCCCACCA AGTACGCAGA GACCCCCTCG ACATCCTGGA 002560
002561 CACCACAGGG GCACCTGCAG GCTGGGAGAC CAGGTCCTCT GTGCATGGGC CCGGGAGGCA GACCTGCCCT AAGGGTGATG 002640
002641 CACAGGCTAC AGGTGCTGCA CGCTCCAGCG CCCACTCTAG ACATCAGCCT CCAGGTTGAC TAAGGGTCAG GTCATGTTTG 002720
002721 AAACCATGCT TGGCTGGACC AGGACCCATG GCAAGAGCAC CTGGGCACCA GTGTTTAGCC CTGGTCTGCA GGAAGGAGGA 002800
002801 CAGCAGACTT TAGGACCCCA CAGCACGGCA GTGCTGACCA TTTCACCCAC TTGGCCTCCT TGAGAAATAT GGATGGGGAG 002880
002881 CCCTCTGGGG ATGGGCAAGG CCTTCCAGGA TAGGCTCAGT TTTGGTCCCC TGCTTTTTGA GGTTGGGTTA AAATTCCGAC 002960
002961 CATGGCAGAG GAAGCACAGC TCGGGTTCCC ACACCTCACT TTTCACAGCC TCTGAGGGCA GCAGTGCACG TGGAGGAGAC 003040
003041 GTCTCCCATG AGGCCAAGGC CTCCAGTGCT CACCGATGCC CTCTGCGAAG TTGGGGTAGA ACTCGTCAGT GAAGAGGGGC 003120
003121 TCGGGCAGCT CACGGAAGTA CAGCTTCAGC ATGCCTGCGA TGGCGTTCAC GTCCATCTCG CTCATCATCA CTGACACGTC 003200
003201 CTTGTTATCT GGAAAGAGCA CGGAAATGCA GCGGCCTCCT TGAAGATCCT GATAAATGAA GAAAAGACAC AGAGAAGGAT 003280
003281 GTGACATGCC TGGGCCATGG AGCACTCTGA GATCTCATCG TGGACACCAC TGCCCACACC TCCATCCCGT CCTGCGCAGG 003360
003361 CCGACACTCA CTGACGTTGA AGCCTGCCTT CAGTGCCTGG ATGTCTGCGG CCACCCCAGA CATGCGGTAG ATGCCCACCT 003440
003441 CCTCCATGCC TCGGCGCTCG ATCTCCTCCA CGCACTGACG CACGATGTAG GGCACCTTGG ACCTCTCTCT CCTGCGGGAG 003520
003521 GAGGGAATGT TCTCAGTGTC CTAACAGCCC TGCTTGGGCC ATAACACAGG AGACCTGCTC CCTATCTGCG CACCCGGAGG 003600
003601 TGGGGTGAGG ACGGTGACGA AGGTACCCAG GTCTGGGGCT GCACACAGAG CCTTCTGCAT GCCTGTCCTC CCTCTGCAAG 003680
003681 CTCTGTCCTC ATTGCATGTA CTTTCTCAGG AACCTTTCAA GCGGCCAGAA CCCCTGCGAA TCACACATGA CCTTTGTGGG 003760
003761 AAGGTCAGGA GGCCTGTCTA AGTCAAGTCA GCACGGGAAG GGCATCTGAC AGATTCCAGG CCTGGGGTTA GCAGCCTGTG 003840
003841 CCCCCGGCTG GGAGGTCAGA CCCGGTGTTG GTCCTGCCAC CCACGTGCTG TGTGAGAGGA GAATCCCTGA CCCCTGCCCT 003920
003921 GGGCCTTAAC ACACATCCGA CGAATGAATG AAGGGTTGCC TCAGCACCGG TGCTCCAAGT CCTGCGATGC TAAGTGCTTT 004000
004001 TCTCCTCTGA GTCTTAGCAA TGGACAATTC CAATACCTCC ACACAGGACA CTAGAGTAAG AATCCTTCAC AGTTAGAACG 004080
004081 CAGTGCTGTG CGGAGGCCTT AACTTGAGTT CTGTTTTGCA CCTGGATTTA CCAGCACATC AAAGCTGCTT CGCAAGCCCC 004160
004161 CTCATCAGCA GGGCTTATGT GGGGGAGCTG CTGATGGAGT CCTCGCTGCT CATGCCCACA GCCCTCCCAG AGTGCTATGC 004240
004241 GAGTGGCTGC CGTGCAGTTG GGGGTGGGGC GTGGTGTTTA GACACAGATA GGAGTCCAGG GTATGACTGA TGGAGGCCCC 004320
004321 GGCCCACGTG ACCAGCAAGG TCAGAGGCCC AGCCAGATTC CATCCTGGGG AAGCAAATGA ATTCTCAGAG GAAGTGGTCT 004400
004401 GTGTCTGTAT GAACTGCTCT CAAACCAACA AATAGGCTTC TCTTGGCAAC TGACTCGTGA CAAAGGGTTC AAGATTGTTT 004480
004481 GAAAAAAAAA AAAAAGGGGG GGAACAGGGA GGCAGTAGGT CCTGGAAAAG TAAATTCTTT ATTTTACAAT AAGAAAGTGA 004560
004561 TTACATATTT TATTTTTTTT ACAATGGTGG AAAATTAGAA GTGATTGTGA AAATGATGTC TACCCGCCTT GCTGATGAGT 004640
004641 AGGATGTGAT TTGGCTCTTT AGGAAACTGA ATTTGCAGAA CTTAAGAATA TTGATTTATA AAGGGCATGG CCATTGACCC 004720
004721 AGTCCATCTT ATGCAAATCT GGATGCCATA AATAATATTT AAAAATGAAA GTATTGGGGT GGAGGTTGCA GTGAGCGGAG 004800
004801 ATCGCCCCAC TACACTCCAG CCTGGTCAAC AGA
[back to top]

Predicted Small Protein

Name ENST00000420508.1_smProtein_3047:3193
Length 49
Molecular weight 5258.9265
Aromaticity 0.0
Instability index 53.9375
Isoelectric point 5.49053955078
Runs 9
Runs residual 0.0219298245614
Runs probability 0.0337985043867
Amino acid sequence MRPRPPVLTDALCEVGVELVSEEGLGQLTEVQLQHACDGVHVHLAHHH
Secondary structure LLLLLLLLHHHHHHLLEEEELLLLLLHHHHHHHHHHLLLLEEEELLLL
PRMN -
PiMo -