ENST00000422661.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000422661.1

Source

Gencode19

Same with

lnc-LBX1-1:1,NONHSAT016043

Classification

intergenic

Length

2222 nt

Genomic location

chr10-:103012578..103023307

Exon number

3

Exons

103012578..103014324,103020624..103020722,103022932..103023307

Genome context

Sequence
000001 AGTTTCTTGA AACAGCTCCA TATTCTTTCT TCTGGCCTCC CACATATTCC TTGGGCTAGA AATCTCTTTC TTGATTTTAA 000080
000081 TCTTGGCAGC CACCCTCCAT GACAGCCTTA GGTCTGCACA TTCATCGAGA GAGCCTTGCT TCCTTCCCAG CACCCTGCAC 000160
000161 ACGGGTGTAC ATGGGTACAC ATACATGCAC ACACACATGC ACACACATAT GCACACACAT GTACACACAT GCACGCGCAC 000240
000241 ACACACACAC ACATATACAC ACACGCATCC TTTGTTAGGA GTGAGTTTAC TACTACATTC TGGCCTGTCT CCCACGTTCG 000320
000321 AGTCAGGCGA AGGGGAACAG CAGCTTTGAA GATGAATTTA ACCAGTTCTT CCTGAGGGCG GATTGCGGTC TCCTTATCTG 000400
000401 ACCCTTGCTG AGAGAGAAGG AGCAGCGTGG AGGAGGCGGC AGTCAGGGAA GCCTTGTCTC AGTCCAAGAG CAAAGTGACT 000480
000481 ACCGTGTGCT GAGCACTGGA GCTTGGTGAC CCAAAGATGA ATAAGACTCG ACTCTTATCC TTAAGGAGCC TGCAGTCTGA 000560
000561 TCAAGTCATT ACTGAGAAGA GAGGAAGGAA AAGATACCCT TGGCCTTTCC AACTTGTCAA GGGTCAACTG AATTCCTGAG 000640
000641 CCGGTCCCCC TGAGAGGGCA GTGGGCGAGA TTCCAGCAGG TAATGGATGA GCACAGCTAT GCCCTGACAG GGACATTGCC 000720
000721 TGCAATTGGT TCCAGTCATA TATGGAGCCA AACTGCTTTG AAAATTGGGG GGGATGGTGA CAGAAGAGAG CAGGCCCACC 000800
000801 CCTCCCCCAT CCCCTAGGAG CCTAGGGCCC TGTCTTGATC CCCCTTCTGG GAGATGAAAC GTGTGGTTTC CCAAAGCTAG 000880
000881 GAGCAGAGCA AATATCTTCT GCCTCGGAGG GGTTGGTCTC TGCACAGGCT GGGAACCCCC AGGGAAGCAG CACTGAGGGC 000960
000961 CCTAGGAGAG AGGGCAGAGG CCAGAGGCAG GGTACTGCCT GCTCAGAAGG TCAGATTCCA GAGCAAACAG CAAGCTGTCT 001040
001041 GCCTTTTCAG ACTCTGAAAG GATGGGGGTA GGGGCAGGAA GGGAGGGTGA AAGTTTAGAG CCCCTGTGGG TAGGGAAGGG 001120
001121 GCCTCTAGGG TCTGACAGGC ACCCCCAGGA CACTGTGTCT GCCCAAGTGT TTGCTGAGAA AGTGGAGGCC AGTGCAGCCA 001200
001201 CCGGTTGAGT GCAGCCACTG GGTCAGCGCA GCGGCCGGGT GAGTGCAGCC CTCGGATTTT GCCCCAATAA CCAGAGTCCC 001280
001281 ATTAGCACAG TCTGAGCAGG GGGCCTGGCA GAGCACTTCG CCCTCCTCTG TCATTTAGCG GGGAAACAGT TCACACAGGG 001360
001361 ACAACTACCA TCTTGAGTCT CTTCTGTCAA CTGCCCTGTG GTCTCTCTGG CCACACTGGG ACAGAGCATC ACTCCAGTAA 001440
001441 ACCCTCTGAG CTCATTTCCC TAGCTGAGCA GGTTCCCGCC TCTGTTCCTA GAGCACCAGC ATGAGTGAGC CTCAGGAACC 001520
001521 ACCCCAGATT TTAGGAGTTA GGAGTGGGTC TAGCTGTGCT GATGGCCACC TGGGGCTCTG GTGAACTCTA GCCTCCTCCC 001600
001601 ATCCGCCCAT CGAGGGCATC GTCAGGCCTC TGTGCTGAGC CATTTGCCTC CTGCTCTGCC CCAAACCTGT TCAGCCCCCA 001680
001681 ACATTCTCAC TTTCCTGTCC CCTTCATGCT TCTTAGGTCA TTTCTCTCTG CTTCTGCAAA CCTCCCTGCC AAATGTTCCC 001760
001761 CCACCCCAAA CCGACCCTTT TCATCTCTAT GTCCCCCCGT GTACACCTCT CTCAAAATGC AGGGCCACGG GGCCCTCCTT 001840
001841 CTTAGGGACT AGGCCATGCC TAGGGGTAGG GCTGCTGTGG CATTAGTGAC AAAAACTGCT ATGTCTACCC ACGTAAATCA 001920
001921 CATAAATATA CAAGCAGGGG CCAGGCGTGG TGGCTCATGC CTATAATCCC AACACTTTGG GAGGCTGAGG CGGGTGGATA 002000
002001 ACTTGAGGCC AGGAGTTCAA GACCAGCCTG GCCAACATAG TGAAACCCCG TCTCTACTAA AAATACAAAA ATTAGCTGGG 002080
002081 GGGGTGGTGG TGCACGCCTG TAATCCCAGC TACTCAGGAG GCTGAGGCAG GAGAATCGCT TGAACCCAGG AGGTAGAGGT 002160
002161 TACAGTGAGC CGAGATCTTG CCATTGCACT CCAGCCTGGG CAACAGAGTG AGACTCTGTC TC
[back to top]

Predicted Small Protein

Name ENST00000422661.1_smProtein_98:277
Length 60
Molecular weight 6718.7428
Aromaticity 0.0508474576271
Instability index 72.4898305085
Isoelectric point 8.79241943359
Runs 11
Runs residual 0.0419841393251
Runs probability 0.0441939265469
Amino acid sequence MTALGLHIHRESLASFPAPCTRVYMGTHTCTHTCTHICTHMYTHARAHTHTHIHTRILC
Secondary structure LLLLLEEELLHHHLLLLLLLLEEELLLLLLLLLLHHHHHHHHHHHHHLLLLLLEEEEEL
PRMN -
PiMo -