ENST00000422661.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000422661.1 |
Source |
Gencode19 |
Same with |
lnc-LBX1-1:1,NONHSAT016043 |
Classification |
intergenic |
Length |
2222 nt |
Genomic location |
chr10-:103012578..103023307 |
Exon number |
3 |
Exons |
103012578..103014324,103020624..103020722,103022932..103023307 |
Genome context |
|
Sequence |
000001 AGTTTCTTGA AACAGCTCCA TATTCTTTCT TCTGGCCTCC CACATATTCC TTGGGCTAGA AATCTCTTTC TTGATTTTAA 000080
000081 TCTTGGCAGC CACCCTCCAT GACAGCCTTA GGTCTGCACA TTCATCGAGA GAGCCTTGCT TCCTTCCCAG CACCCTGCAC 000160 000161 ACGGGTGTAC ATGGGTACAC ATACATGCAC ACACACATGC ACACACATAT GCACACACAT GTACACACAT GCACGCGCAC 000240 000241 ACACACACAC ACATATACAC ACACGCATCC TTTGTTAGGA GTGAGTTTAC TACTACATTC TGGCCTGTCT CCCACGTTCG 000320 000321 AGTCAGGCGA AGGGGAACAG CAGCTTTGAA GATGAATTTA ACCAGTTCTT CCTGAGGGCG GATTGCGGTC TCCTTATCTG 000400 000401 ACCCTTGCTG AGAGAGAAGG AGCAGCGTGG AGGAGGCGGC AGTCAGGGAA GCCTTGTCTC AGTCCAAGAG CAAAGTGACT 000480 000481 ACCGTGTGCT GAGCACTGGA GCTTGGTGAC CCAAAGATGA ATAAGACTCG ACTCTTATCC TTAAGGAGCC TGCAGTCTGA 000560 000561 TCAAGTCATT ACTGAGAAGA GAGGAAGGAA AAGATACCCT TGGCCTTTCC AACTTGTCAA GGGTCAACTG AATTCCTGAG 000640 000641 CCGGTCCCCC TGAGAGGGCA GTGGGCGAGA TTCCAGCAGG TAATGGATGA GCACAGCTAT GCCCTGACAG GGACATTGCC 000720 000721 TGCAATTGGT TCCAGTCATA TATGGAGCCA AACTGCTTTG AAAATTGGGG GGGATGGTGA CAGAAGAGAG CAGGCCCACC 000800 000801 CCTCCCCCAT CCCCTAGGAG CCTAGGGCCC TGTCTTGATC CCCCTTCTGG GAGATGAAAC GTGTGGTTTC CCAAAGCTAG 000880 000881 GAGCAGAGCA AATATCTTCT GCCTCGGAGG GGTTGGTCTC TGCACAGGCT GGGAACCCCC AGGGAAGCAG CACTGAGGGC 000960 000961 CCTAGGAGAG AGGGCAGAGG CCAGAGGCAG GGTACTGCCT GCTCAGAAGG TCAGATTCCA GAGCAAACAG CAAGCTGTCT 001040 001041 GCCTTTTCAG ACTCTGAAAG GATGGGGGTA GGGGCAGGAA GGGAGGGTGA AAGTTTAGAG CCCCTGTGGG TAGGGAAGGG 001120 001121 GCCTCTAGGG TCTGACAGGC ACCCCCAGGA CACTGTGTCT GCCCAAGTGT TTGCTGAGAA AGTGGAGGCC AGTGCAGCCA 001200 001201 CCGGTTGAGT GCAGCCACTG GGTCAGCGCA GCGGCCGGGT GAGTGCAGCC CTCGGATTTT GCCCCAATAA CCAGAGTCCC 001280 001281 ATTAGCACAG TCTGAGCAGG GGGCCTGGCA GAGCACTTCG CCCTCCTCTG TCATTTAGCG GGGAAACAGT TCACACAGGG 001360 001361 ACAACTACCA TCTTGAGTCT CTTCTGTCAA CTGCCCTGTG GTCTCTCTGG CCACACTGGG ACAGAGCATC ACTCCAGTAA 001440 001441 ACCCTCTGAG CTCATTTCCC TAGCTGAGCA GGTTCCCGCC TCTGTTCCTA GAGCACCAGC ATGAGTGAGC CTCAGGAACC 001520 001521 ACCCCAGATT TTAGGAGTTA GGAGTGGGTC TAGCTGTGCT GATGGCCACC TGGGGCTCTG GTGAACTCTA GCCTCCTCCC 001600 001601 ATCCGCCCAT CGAGGGCATC GTCAGGCCTC TGTGCTGAGC CATTTGCCTC CTGCTCTGCC CCAAACCTGT TCAGCCCCCA 001680 001681 ACATTCTCAC TTTCCTGTCC CCTTCATGCT TCTTAGGTCA TTTCTCTCTG CTTCTGCAAA CCTCCCTGCC AAATGTTCCC 001760 001761 CCACCCCAAA CCGACCCTTT TCATCTCTAT GTCCCCCCGT GTACACCTCT CTCAAAATGC AGGGCCACGG GGCCCTCCTT 001840 001841 CTTAGGGACT AGGCCATGCC TAGGGGTAGG GCTGCTGTGG CATTAGTGAC AAAAACTGCT ATGTCTACCC ACGTAAATCA 001920 001921 CATAAATATA CAAGCAGGGG CCAGGCGTGG TGGCTCATGC CTATAATCCC AACACTTTGG GAGGCTGAGG CGGGTGGATA 002000 002001 ACTTGAGGCC AGGAGTTCAA GACCAGCCTG GCCAACATAG TGAAACCCCG TCTCTACTAA AAATACAAAA ATTAGCTGGG 002080 002081 GGGGTGGTGG TGCACGCCTG TAATCCCAGC TACTCAGGAG GCTGAGGCAG GAGAATCGCT TGAACCCAGG AGGTAGAGGT 002160 002161 TACAGTGAGC CGAGATCTTG CCATTGCACT CCAGCCTGGG CAACAGAGTG AGACTCTGTC TC |
Predicted Small Protein
Name | ENST00000422661.1_smProtein_98:277 |
Length | 60 |
Molecular weight | 6718.7428 |
Aromaticity | 0.0508474576271 |
Instability index | 72.4898305085 |
Isoelectric point | 8.79241943359 |
Runs | 11 |
Runs residual | 0.0419841393251 |
Runs probability | 0.0441939265469 |
Amino acid sequence | MTALGLHIHRESLASFPAPCTRVYMGTHTCTHTCTHICTHMYTHARAHTHTHIHTRILC |
Secondary structure | LLLLLEEELLHHHLLLLLLLLEEELLLLLLLLLLHHHHHHHHHHHHHLLLLLLEEEEEL |
PRMN | - |
PiMo | - |