ENST00000422730.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000422730.2 |
Source |
Gencode19 |
Same with |
lnc-CALCOCO2-2:1 |
Classification |
intergenic |
Length |
1276 nt |
Genomic location |
chr17+:46800530..46802819 |
Exon number |
2 |
Exons |
46800530..46800675,46801690..46802819 |
Genome context |
|
Sequence |
000001 GGCCCGGGGC CGCTCCCGAG CTTTCTCCCC TCTTCCCTGG AGAGCGACTG TTCGGGAGGG TGAGAATGGT ATAAATTTCA 000080
000081 AAAACAACGA AACCTTCTTT TGCCCCCTCC GCAGCAGTCG CCTCCGGGCT TTATTGCAAG TTTACGGTTC CATACAAGTA 000160 000161 AATCCGAAAA AAAGTGTGTG TGGGGGGGTC CACACCACTA ATTATTATGG CGAGGAAGAT AAAGAAGACA TGGACAGAAG 000240 000241 GCGGATGGCT CTGCGGCCTG GCTCCCGCAG ACCGACCGCC TTCTTCTTCC ATTCGAGATG GCTCGTACCG AACCTCCTTG 000320 000321 CCTTCTTCCT GGGTCTCTCG GGGGCTGGAC CAATACATCT GCCGATGCCC TGGCCGAATG GCAGGCGACA TCGGGTCCTG 000400 000401 GACCCCCACA CGCAGCTCAG TACCCACGAG GCCCCAGGCC GCTGGAAGCC TGTAGCTCCG CGGACGATGA AAGCCTGCCC 000480 000481 GCAGGTTCTC CTGGAGTGGT GAGCCTCTGT CGGAAGGGGG CGCCCACGTC TTTTTAATGG TCCTAACACA CCAGTGGAAT 000560 000561 AAATCTCTAA GATTCCACAT CTTTTGTTTG CTCTGAATTT ATTGCGAGTG AAAAACAGAG AAAATCCTCA AGTTTAAGTT 000640 000641 TCTGATAGCA GAGTGTGGGA GTTAGAGCAT GGGGAGTCCA GAGGTTCCAG ACCCCCAAAG GTCTCTACCA GGGCCATCTC 000720 000721 CGTTAGTGGC GGTGGCAGCC CCTCTTGTGG CCTTTTTCCT CTCTCCAAGG GGTCACCCCG CACCATGCCG CTCCCCCTCA 000800 000801 TCTATCTTGC CCCCTCCCCA CAGGCCCATC TGCGCTGAAC TCTCGCCAGT TCCGAAGTCG GCGAGGGAGG GGGTTTACTT 000880 000881 GCCCGATCGT TGGTGGGTTT GAGCTTATAG AGGCAGAGGA GTAAGAACCT GCGATATTGA AAGCTACCCA CATGGGGCTT 000960 000961 CCTTGAAGGA GGACGTGGAA GGCAGAAAGT GACCTGCTCT GAGCGGCGCA TGTAACCGAG GACCTTAAGC TGGACCACGG 001040 001041 GGCTTGGACG ATTTTTTAAA TCAGGAAATC GACCTCATCT TCCTCCTCCT CGTCCTCTTC CCCTGAACCC CCAGTCCGCA 001120 001121 TGCACTCACA CTCTTTGGCC TTTTCCCTCA GTCCCGGGCT CCTCTTTGGT AAATAGATTT GTAGGTGTCT AAGTCACGTC 001200 001201 CCACCCTCAC TCCTTCCCAG GAGAGGAGAC AGGGCTAGGA TCCCACCCGA CCGCGGGCCA TAAACACTTG GCTGCG |
Predicted Small Protein
Name | ENST00000422730.2_smProtein_206:454 |
Length | 83 |
Molecular weight | 8882.0143 |
Aromaticity | 0.0731707317073 |
Instability index | 48.1134146341 |
Isoelectric point | 10.1920776367 |
Runs | 9 |
Runs residual | 0.0261456023651 |
Runs probability | 0.0182829888712 |
Amino acid sequence | MARKIKKTWTEGGWLCGLAPADRPPSSSIRDGSYRTSLPSSWVSRGLDQYICRCPGRMAG DIGSWTPTRSSVPTRPQAAGSL |
Secondary structure | LLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEELLLLLLL LLLLLLLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |