ENST00000423477.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000423477.2 |
Source |
Gencode19 |
Same with |
lnc-AC073263.1-1:2 |
Classification |
intergenic |
Length |
1804 nt |
Genomic location |
chr2+:74375166..74377188 |
Exon number |
2 |
Exons |
74375166..74375605,74375825..74377188 |
Genome context |
|
Sequence |
000001 CCCGCCATCC CCTGGCCCTG GCTGACTCGC CACCCCCGAC ACTGCAGCGC CTGCCGACCT CGGGGCCCCG CCCTCTGCCT 000080
000081 TCGCTCGCGC CGCTCTCCTT CAGTCTCCCC AGGGCCTGTT TCATGGATAG GGTCCCCTTG CCCGCGTGAA AGTCTCATTC 000160 000161 CTCCTCAGCT CAGAAACACT CCAAGGTCTC GGCGCCCTAT ACTGGCCTTC CCTCATCCGA ATACCCCTCG TGCTCCTGAT 000240 000241 GTACTTTTCC ATTCCCACTC CCTACTCTGG CAGTCTAGCT TCTAAGCTGA GGAGTTTGGC CTTCGCTCCA GGTGCGGGGA 000320 000321 CTCGTGGAAG GATTTGATTC GCGCTTGAGA AAGATCGCTC CGCTCCTGTA AGGAAGAGAG CGTGTAGGGG CTGCAACCAG 000400 000401 AGACACAGTC AGAAGCTCCG AGGCTACCGC GATGGTCCAG GTGCCACAGG ACACAGCCTA ACAGAGGCCC AGGTTGGAGC 000480 000481 CATGGACCAT GGAGTCATGA GAATGGAAGG GAAGCTGACG CCATGTGGGA TGGGGTAGAA CTGTCCGCAA ATTCGTCCCG 000560 000561 CCTCTGGAGT CTTCAGACCA GTCAAGGCCG AAATTCAACC AAGCCTCTCC TCTCTCTAGC TGTTATTTGT TTGCAGCACG 000640 000641 CGGTCTGGTG GCACCCTGCA GGATTTACCA GCTTTTTGCC AACATTCTGG CCTATGCAAT CAATACGTCC CTTCAGCGTT 000720 000721 GCACTTGGAT GGATTGGACC TATAGTTGTT ATATATGGAT ATTGTCTAAT TTATTTATTA CAGTATTAAC TGACTCCTAT 000800 000801 GTTCTGGCCT TCAGAATTTC TCCTTTGGAT CAATTACTAG CCTGTCTTAC ATTTTCTGCT TCATTCTTTT AAAATGTTTA 000880 000881 GAGATGATTT GCTAAGTTTT CTTCATTGCT GTCAATGATG CAATTTAAAC TGTCAAAAAA ATTTTTTCTC AAGCAGGGTA 000960 000961 GTAATGGTGA ACCATTCCCT TGCTATTCAG ACAGCATGGT TTAGATGAGG CGCACCTATC CCCAGCTTTA GGAATGGAAA 001040 001041 CAGGACCCAA GTCTGGCTAA TCAGAGACTG GTTTAGGGTC GGCCCCATGG TCTGAGCCAG ACCAATGAGA ATTGGTAGAG 001120 001121 GGACTTCCTT TTGCAACTTC TATTTTAGAA TCGGGGGTAT ATATGCAGGC TTGTTACAGA GGTATATTGC ATGGTGCTGA 001200 001201 GGTTTGGAGT ATGAACGAAT CCGTCCTTCA GGTAATGAGC ATAGTACCCA ATAGGTAGTT TCAACCCTTG CCCCCTTCCT 001280 001281 CCTTCCCCAG TCTTGTATTC CCCAGTGTCT GTTGTTCCCA GACATTGATC TTTTTCCTCT ATGTTGCTAA GCTGGTAGAA 001360 001361 AGGCTGGAGT TGCTGGCAAC CATCTTTGCA ACCATGCAGG GAGAACTACT TTGGAAATGA AGCAAGATAA AGAAGAAAAC 001440 001441 AGATAAAAGG AGACAAATGT TTGACTTTGT ACAGCTGGAA ACCAGCAATG CTGGAAATGA GCACTGAAGG CAGTTTAATG 001520 001521 GGTTTGTCAC TTGTAACCAA GTGACCCATG GCAAGCTCAC AGATTTGTAT TGGCAGAATT CCTCCTTTTC TTTATTTAAA 001600 001601 ATGGTACTTT TGGCCAGGCA AGGTGGTTCA CACCTGTAAT CCAAAGACTT TGGGAGGCCG AGGCGCACTG ATCACCCAAG 001680 001681 GTCAGAAGTT CGAGAACAGC CTGGCCAACA TTGGCGAAAC CCCATCTCTA CTAAAAATAC AAACCATTAG CTGGCTGCGG 001760 001761 TGGCCTTTCT ACCAGCTTTT TGTCTCAAAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | ENST00000423477.2_smProtein_728:871 |
Length | 48 |
Molecular weight | 5490.3667 |
Aromaticity | 0.212765957447 |
Instability index | 47.1425531915 |
Isoelectric point | 3.92962646484 |
Runs | 8 |
Runs residual | 0.00393617021277 |
Runs probability | 0.0352411234764 |
Amino acid sequence | MDWTYSCYIWILSNLFITVLTDSYVLAFRISPLDQLLACLTFSASFF |
Secondary structure | LLLEEHHHHHHHHHHHHHHHLLLLLLLEEELLHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii |