ENST00000423477.2

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000423477.2

Source

Gencode19

Same with

lnc-AC073263.1-1:2

Classification

intergenic

Length

1804 nt

Genomic location

chr2+:74375166..74377188

Exon number

2

Exons

74375166..74375605,74375825..74377188

Genome context

Sequence
000001 CCCGCCATCC CCTGGCCCTG GCTGACTCGC CACCCCCGAC ACTGCAGCGC CTGCCGACCT CGGGGCCCCG CCCTCTGCCT 000080
000081 TCGCTCGCGC CGCTCTCCTT CAGTCTCCCC AGGGCCTGTT TCATGGATAG GGTCCCCTTG CCCGCGTGAA AGTCTCATTC 000160
000161 CTCCTCAGCT CAGAAACACT CCAAGGTCTC GGCGCCCTAT ACTGGCCTTC CCTCATCCGA ATACCCCTCG TGCTCCTGAT 000240
000241 GTACTTTTCC ATTCCCACTC CCTACTCTGG CAGTCTAGCT TCTAAGCTGA GGAGTTTGGC CTTCGCTCCA GGTGCGGGGA 000320
000321 CTCGTGGAAG GATTTGATTC GCGCTTGAGA AAGATCGCTC CGCTCCTGTA AGGAAGAGAG CGTGTAGGGG CTGCAACCAG 000400
000401 AGACACAGTC AGAAGCTCCG AGGCTACCGC GATGGTCCAG GTGCCACAGG ACACAGCCTA ACAGAGGCCC AGGTTGGAGC 000480
000481 CATGGACCAT GGAGTCATGA GAATGGAAGG GAAGCTGACG CCATGTGGGA TGGGGTAGAA CTGTCCGCAA ATTCGTCCCG 000560
000561 CCTCTGGAGT CTTCAGACCA GTCAAGGCCG AAATTCAACC AAGCCTCTCC TCTCTCTAGC TGTTATTTGT TTGCAGCACG 000640
000641 CGGTCTGGTG GCACCCTGCA GGATTTACCA GCTTTTTGCC AACATTCTGG CCTATGCAAT CAATACGTCC CTTCAGCGTT 000720
000721 GCACTTGGAT GGATTGGACC TATAGTTGTT ATATATGGAT ATTGTCTAAT TTATTTATTA CAGTATTAAC TGACTCCTAT 000800
000801 GTTCTGGCCT TCAGAATTTC TCCTTTGGAT CAATTACTAG CCTGTCTTAC ATTTTCTGCT TCATTCTTTT AAAATGTTTA 000880
000881 GAGATGATTT GCTAAGTTTT CTTCATTGCT GTCAATGATG CAATTTAAAC TGTCAAAAAA ATTTTTTCTC AAGCAGGGTA 000960
000961 GTAATGGTGA ACCATTCCCT TGCTATTCAG ACAGCATGGT TTAGATGAGG CGCACCTATC CCCAGCTTTA GGAATGGAAA 001040
001041 CAGGACCCAA GTCTGGCTAA TCAGAGACTG GTTTAGGGTC GGCCCCATGG TCTGAGCCAG ACCAATGAGA ATTGGTAGAG 001120
001121 GGACTTCCTT TTGCAACTTC TATTTTAGAA TCGGGGGTAT ATATGCAGGC TTGTTACAGA GGTATATTGC ATGGTGCTGA 001200
001201 GGTTTGGAGT ATGAACGAAT CCGTCCTTCA GGTAATGAGC ATAGTACCCA ATAGGTAGTT TCAACCCTTG CCCCCTTCCT 001280
001281 CCTTCCCCAG TCTTGTATTC CCCAGTGTCT GTTGTTCCCA GACATTGATC TTTTTCCTCT ATGTTGCTAA GCTGGTAGAA 001360
001361 AGGCTGGAGT TGCTGGCAAC CATCTTTGCA ACCATGCAGG GAGAACTACT TTGGAAATGA AGCAAGATAA AGAAGAAAAC 001440
001441 AGATAAAAGG AGACAAATGT TTGACTTTGT ACAGCTGGAA ACCAGCAATG CTGGAAATGA GCACTGAAGG CAGTTTAATG 001520
001521 GGTTTGTCAC TTGTAACCAA GTGACCCATG GCAAGCTCAC AGATTTGTAT TGGCAGAATT CCTCCTTTTC TTTATTTAAA 001600
001601 ATGGTACTTT TGGCCAGGCA AGGTGGTTCA CACCTGTAAT CCAAAGACTT TGGGAGGCCG AGGCGCACTG ATCACCCAAG 001680
001681 GTCAGAAGTT CGAGAACAGC CTGGCCAACA TTGGCGAAAC CCCATCTCTA CTAAAAATAC AAACCATTAG CTGGCTGCGG 001760
001761 TGGCCTTTCT ACCAGCTTTT TGTCTCAAAA AAAAAAAAAA AAAA
[back to top]

Predicted Small Protein

Name ENST00000423477.2_smProtein_728:871
Length 48
Molecular weight 5490.3667
Aromaticity 0.212765957447
Instability index 47.1425531915
Isoelectric point 3.92962646484
Runs 8
Runs residual 0.00393617021277
Runs probability 0.0352411234764
Amino acid sequence MDWTYSCYIWILSNLFITVLTDSYVLAFRISPLDQLLACLTFSASFF
Secondary structure LLLEEHHHHHHHHHHHHHHHLLLLLLLEEELLHHHHHHHHHHHHHLL
PRMN LLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii