ENST00000424349.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000424349.1 |
Source |
Gencode19 |
Same with |
lnc-MRPS25-1:4 |
Classification |
intergenic |
Length |
3792 nt |
Genomic location |
chr3-:14984291..14989014 |
Exon number |
2 |
Exons |
14984291..14987661,14988594..14989014 |
Genome context |
|
Sequence |
000001 GCGCACCGGA ACGCCGCAGC CGGCGCTCGG TCCATCCGGC CCGTGGGCTG TGGGGCCCCG GGCGGCGGCG GCTACGTAGC 000080
000081 TGCCGCCGGC CTTGGCCGCG GCCGGGCGGG CGGATATGTG GCTTAAATGG CGCAGGCGTC GGGGCCTAGA GGCTGAAGGG 000160 000161 CTGGTCGTCC TAAAAACTCG TGGACGTCGC GCACGGTTAC CCGGACGCAG GCCCGCCCCT CTGGGGAACC GCGAGCTCCT 000240 000241 CGCAGCTGGG TGGGGACCGT CCTCGCAGTG GCGGCCTCCA CCCTGCCTTC TCGCTTAGCC AAGGCTTCTG GAAGGCTCGC 000320 000321 AAAGTGTCTG TTGTTGGAAG AAGCCGGGCC CTGACTGGCG CGACGGATTC TCCCAGCCGC TCAGCAGAGC GTCTGTAGGT 000400 000401 CGGAAGTGGG GGTTGTATTG GAATATGCTT TTTGTCTAAT GATGTTAGAT AAAAAGCAAA TTTGGAGCAG TTTTCTTATT 000480 000481 CGAGTTCAAA ATGGTTCATA AAGCAGCGAA GACAACTCAA AACATCAGTA ACACATTTGG CCCAGGAACT GCTAACAAAC 000560 000561 ATACAGTGCA GTGGTGGCTT AAGAAGTTTT GCAAGGAAGA GAGCCTTGAA GATGAGGAAC GTGATATGGG CCATGGGAAG 000640 000641 TTGACAACGA CCAATTGAGA GCAATCATTG AACTACATGA AAAATTACAG AAGAACTCAG CGTTGACTAT TCTACGGTCA 000720 000721 TTAGGGTCGT TCAGCATTCG AAGCAAATTG GAAAGGTGAA AAAGCTTGAT AAGTGGGTGC CTCATGAGCT GAGCGGAAAT 000800 000801 CAAAACTATC GTTTTGAAGT GTAGTCTTCT TTTATGCTAC GCAACAACAA ACCATTTCTC AATCGGATTG TGACATGTAA 000880 000881 TGAAAAGTGA ATTTTATACA ACAACCAGCT CAGTGGTTGG ACCAAGAGGC AGCTCCAAAG CAGTTCCCAA AGCCAAACTT 000960 000961 GCACCAAAAA AAAGGTCATG GTCACTGTTC GGTGGTCTGC TGCCCATCTG ATCCACTACA GTTTTCTGAA TCCTGGTGAA 001040 001041 ACCATTACAT CTGAGAAGTA TGCTCAGCAA ATTGGTAAGA TGCACCGAAA ACTGCAATAC CTGCTGCCTG CATTGGTCAA 001120 001121 CAGAAAGGGC CCAATTCTTC TCCACGACAA CACCTGACTG CGTGTCGCAC AACCAGTGCT TCAAAAGTTG AAGGAATTGG 001200 001201 GCTACAAAGT TTTGCCTCAT CCACCATATT CACCTGACCT TTCGCCAACT GACTACCACT TCTGCTAGCA TCTTGACAAC 001280 001281 TTTTTGCAGG GAAAACACTT CAGCATGGTG CAGAAAATGC TTTCCAAGAG TTCGTCAAAT CCTGAAGCAC GGATTTTTAT 001360 001361 GCTACAGGAA TAAACAAACA TTTCTCATTG GCAAAAATGT GTTGATTGTA ATGGTTCCTG TTTTGATTAA TAGAATATGT 001440 001441 TTTAGCGTAG TTACAATGAT TTAAAATTCG CAGTCTGGAA ATTTAATTTT TGCATCAACC TAATATTTCT ATGGTAAATC 001520 001521 CTTGCAAACA TGGAAACAAT GCATTTGGCC CAGTGCTTTG TGGTTGTGTA CTCTTTTTCT TTGTTTTTTT AATAGATGGC 001600 001601 ATTGGCCGGG CATGGTGGCT CATGCCTGTA ATCCCAGCAT TTTGGGAAGG TGAGGTGGGT GGATCACCTG AGGTCAGGAG 001680 001681 TTCAAGACCA GCCTGACTAA CATGGTAAAA CCCCATCTCT ACTAAAAATA CAAAAAAATT AGCTAGGCGG GGTGGCGGGC 001760 001761 ATCTAATTCC AGCTACTTCA TGAGGCTGCG ACAGGAGAAT CATTTGAACT CGGGAGGCAG AGGTTGCAGT GAGCCGAGAT 001840 001841 CACACCATTG CACTCCAGCC TGGGCGATGA GCGAAACTGT CTCAAAAAAA AAAAAAGTTG GGGTCTCGCT GTGTTGACCA 001920 001921 GGCTGGTCTC GAACTCCTGG CCTCAAGTGA TCCTCCCATC TTGGCCTCCC AAAGTGTTAG GATTACAGGC GTGAGCCACC 002000 002001 ACACCCTGCC TGGTTGTGTA CTCTTTTAAA TACTAAGTTT TTAATGTTAA ATGCTGCTTT TAGATACACT GTAAAAATAC 002080 002081 ACCTATCAAT GAGTTTTTTT ATTAAAAACA TTGCAATTGT ACTAGACTTT AAATACTAAG CAATAATTCA GGCTTCAATG 002160 002161 TTGGTTTATA GTTTTCTCAT TTCTTTCATT TAATACCTCT GTAAAATGAA GCAGTTACTT CCATTTTCCT GAGGTGAGAT 002240 002241 AAGTGCCCTG CACAATGTTA TAGGCCCAGT AAGTGAGACT GGAGCTCTGA TCTAATCCCT TTGACATTAA AGTTTGTGCA 002320 002321 GTAAACCAGC TATGTCAGTT TGCCACATTT GTAATAGTGT TCAATAAATT TTCACTTAAA GGTTTAATAT TAAAGTAGTA 002400 002401 GCAAGAATTC ATAACCTTAA TTGGCTTTAA CAGCTTTTCT TTCCCTGAAA ACAGATGCAT ATGTACACAT GCACACAGAT 002480 002481 TGCTTACAAT ATCAGCACGT AAAAGGCCTT TGCACATTGA AGTCGGCACT GCTTTGGTGC CTTTTTTGTT TTTTGGCTCG 002560 002561 GTGTTTTGAC TGCAAGTCTT TTTGGATAGA ATTTTATAGT TAGAAAGTAG CTAACACTTG GGTTTTATAG GCACAAAAAA 002640 002641 CAAGTCTTAT ACTAGCTGTA CTTTATTTTT TGAGTTCTTA TTAATGAGGA ACATCCACTT TTGCATTGAC AGTGATTTCA 002720 002721 AGATTGCTTT ATCAGCCTTT AAAGGATTCT TGACTAGTCG TGCACATCAG AACTGCCAGG TCCCCAGTGG TTCTGAAGCA 002800 002801 GTAAGCTTTG GGTGGGCTCT GGCATCAGCA CTTTCACTAA GCTTCACAGA TAATTCTGAT GCATACTCCA GGCCTGAACC 002880 002881 ACTGATCAAT TTGAAACATG CATAACAAAG CAAAAAAAGT TTTGTTTCAC CTTTTGAAAT ACAGTTAACT CTTTTACCAT 002960 002961 GCCAGAGATC ATTCAGAGAG ACAGGTCGTT GCTCCGGAGT GATACAGATC TGGCAGTACC CAGCCCTTGT GTGTGTGCGT 003040 003041 TAGCTCAGCA CCTGCCCACA CTGCGAGCCC CCGTAGGATG TGCCTTGTCC TTCCCTGTTT CAGCACTTAA CACACTACCT 003120 003121 GGTACAGAGT ATGTAGTGGG CATCTGTTGA ATGAATGCTT TTCCCAGTAG CAGTGTATTC ATACAATATT AATATAATTG 003200 003201 TCCCCTGGCT TACAGATAAA AATGAAAGCA TCAAGTGCCC AGTGAGTGAG ACCCAGGTGT TCTTCCTCCA CCCCTAGTGG 003280 003281 TCCCCTGGGC AGGTCTTTTT TTTTTTGTAA CACTCACCAG TCTGTTCTGT AGTCAATCAT TGATTGACTT GTCTGTGAAC 003360 003361 TTGGAGGAAC TGTTTCATAG TTTCATTAGC ACAGAGTAAA CATGTTTGCC ATGCAAGGTT ATTTTGCATC TGCATTTAAG 003440 003441 TGATAATGTT GAATCAATGA AAAGTGTTGA TTAAGCAGTA GTTGTAGATA TGCTAAGTTT TTCAAATTAC TAATATCAAG 003520 003521 TGGAGATTGT TTTTACTTTT AAGGGTATTG CTTTTGTGAT AGCATAAATA ATGGTTTTCC TTTTTTGTAA TGTAAATTAA 003600 003601 TTGCTGGCAA CTTTTGTATT CCCATAGACT GGGGAAGCTT AATTGCCTTT ACAAGTACTT ATGTACAACT TTGTATCAAA 003680 003681 TTTTCTGTAA TAGTTTATGC TTTAGTACTA TATATGTACT AATAATTTTA TCTGACTTCT GTTTATATCA TTTGTACAAT 003760 003761 TACATGGTTG TAAAATAAAC TTTTAAACCT CA |
Predicted Small Protein
Name | ENST00000424349.1_smProtein_977:1156 |
Length | 60 |
Molecular weight | 6800.8677 |
Aromaticity | 0.0847457627119 |
Instability index | 58.4949152542 |
Isoelectric point | 9.86993408203 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0426406798956 |
Amino acid sequence | MVTVRWSAAHLIHYSFLNPGETITSEKYAQQIGKMHRKLQYLLPALVNRKGPILLHDNT |
Secondary structure | LEEEELLHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEELLL |
PRMN | - |
PiMo | - |