ENST00000424415.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000424415.1 |
Source |
Gencode19 |
Same with |
lnc-RP11-706O15.1.1-2:4,NONHSAT136141 |
Classification |
intergenic |
Length |
2194 nt |
Genomic location |
chrX-:3809479..3820041 |
Exon number |
3 |
Exons |
3809479..3811392,3817257..3817463,3819969..3820041 |
Genome context |
|
Sequence |
000001 GTTAAGAAAA TGTGCCAAGA TTACCTCAGT AATTCTGGTC TGTGTTCTCA GGAGACCCTG GAAATAAACA ATGTGTCTTC 000080
000081 TGTGGCTTCA GCGTCACCTA GTGCAGGCTG CCATTCAACA AACGCATTGT CAACAGTCAA CCAAAAGAAA CCCATTGGCC 000160 000161 ACCATACCCT GAGGACTAAC CCTGACACAG ATGCCCTTCC AGATGCCCTC AGTAGTCTAA CTGATTCCAT CGCCCCAGCC 000240 000241 TTGGGGGAGA AGCACTGCTG CCTATGCACT CCATTTACAG GTGAACTGTC ACCCCTACAA CTCAGCTTGC AACCAGCCCT 000320 000321 GGCCACCACC AGTTTCCCCA CACTGAGCTG AATATTGGAC ATGCCCATCT TAGACATTCC AGCCCATTCT GAAATTCCAC 000400 000401 ATCGATTCAC CCGACAAAGT CTGAAGTTCC AGGGCAATTT ATCTGGAAAA GCTCACCTGG AATCATGTGT CATTTCAACC 000480 000481 AACAACTGTC GAAGAGGACG TGGCATCAAA ACCAAGGTTA TCAATTATTT ATAAGGGTTG TGTGGTGGTT GGTCCAAGCA 000560 000561 TCTCTCCTTC ATGCCATCAC TCCTTTCAAG AGCTGCCTCT ATTTTCTAAT TTAGCACAGG AATTTAGATG CCCCTAAATA 000640 000641 AGTAGGCATC CAGTATCTGC CCACACCAGT TTTAGTGAGA GTACATATGG AGACACTGCC ACCACCCCTG CTCTCCTACT 000720 000721 GCATACCCCA CCATGCCAAA GCATGGTGGC TCACACCTGT AATCCCAGTG CTTTGGGAGG CCAAAGAGGA GGAACACTTG 000800 000801 AGGCCAGAAG TATGAGACCA GCCTGGGCAA CATAGTGAGA CCTCATTTCT ATAAATAAGT TAAAAAAACA AAAAAATAGG 000880 000881 GCACAGTGGT GCACATGTGT GGTCCCAGTT ACTCAGCAGG CTGAGGCTGG AAGATCACTT GAGCCCAGGA GTTTGAGGCT 000960 000961 GCAGTGAGCT AGGATTATGC CACTGCACTC TAGCCTGGGC AACAGAGAGA GACCCCATCT CTAAAAAGAG GGAGAAGAAG 001040 001041 GAAGGAGGAG GAAGAAGAGG AAGAGGAGGA GGAGAAATAC TGCTCTTTCT CAGGCCCAAG GTAAAAAGGT TTTTGGTCTC 001120 001121 ATGTTGACCA GAAAGACATT GATATTTAAT TAAGCAATAT AAAAAGGCTC ATTGTTAGGA TTAAAGAGTA AGTAAAATCA 001200 001201 ATATTGAGAT AGGAGGATGG AGGACACCAA CTGAGTTCCG ATCCCAATGA AGAGGAGAAA AAGCTACAAC TATCTAGGTG 001280 001281 AAATATCTAC TTATCCTAGA AGAAGCCTTT TGACAGCAAC ATAAAATTCA TACCTATAGG TTTTTAATTC CTATGGATGC 001360 001361 CGTAGCAAAT AACAAAAACT TGGATGGTGT AAAGTAACAG ATGTTTACTC TTTTCCAGTA TTGGAGACCA GGAATCTGAG 001440 001441 ATCAAGGTGT GGGCAGGGGT GCGCTCCCCC TGGAGGTTCT AGGAGAGGAT CCTTCCTGCC TCTTCCAGCT CCTGGTGGCT 001520 001521 CCAGGTGTCC CTGGGCTTGT GGCCACATCA CTACATTCTC TGCCTCCATC TCCACGTGAC CTTTTCCTCT GTGTCTGTGT 001600 001601 CTCCTCTTCT GTCTCTTAGA AGGACACTGG TCATTGGATT TAAAGGCCAC CTGGGTAATT TATAGTGATC TAATCTCAAG 001680 001681 AATCTTTCCT TAATTACATG CAAATACTCT TTATCCAAAT TAGTTTGCAT TCACAAATTC TGGAGCTTAG TACTTGGACA 001760 001761 TATATTTTGG GGGGTTGATG GTTGGAGGGG CTTTTATTCA ACTCAGTACA TCTTAATAAG GAATTAATGC CCCCCAACTT 001840 001841 GCCTTACAAG TCATATATTA AAAACAATGT TGGCCTGGCA CAGTGGCTCA TGCCTGTAAT CTCAACACTT TGGGAAGCCA 001920 001921 AGGGAGGAGG ATCACTTGAG CCCAGGAGTT GGAGACCAGC CTGGATAACA AAGGGAGACC CAGTTTCTAC AAAATATTTA 002000 002001 AAAATTAGCC AGGCATGATG GTGCATGCCT GTGGTCCTAG CTATTCAGGA AACTGAGGTG GGAGGATCAC TTGAGCCTGG 002080 002081 AAGTTCAAGA CAGCAGTGAG CTATGCTCAC ACCACTGCAC TCCATCCTGG GCAACAGAGC TGGACTCTGT CTCAAAAAAC 002160 002161 ATAACACTAA AACATCAAAA TTAAAAAAAA AAAA |
Predicted Small Protein
Name | ENST00000424415.1_smProtein_1826:2017 |
Length | 64 |
Molecular weight | 7072.1723 |
Aromaticity | 0.111111111111 |
Instability index | 55.5746031746 |
Isoelectric point | 9.90020751953 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0484013425189 |
Amino acid sequence | MPPNLPYKSYIKNNVGLAQWLMPVISTLWEAKGGGSLEPRSWRPAWITKGDPVSTKYLKI SQA |
Secondary structure | LLLLLLLLLEELLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLEEELLLLLLLEEEEE ELL |
PRMN | - |
PiMo | - |