ENST00000424943.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000424943.1

Source

Gencode19

Same with

lnc-RWDD3-4:1,NONHSAT004671

Classification

intergenic

Length

2755 nt

Genomic location

chr1+:95940293..95944912

Exon number

4

Exons

95940293..95940731,95940870..95940930,95942300..95942536,95942895..95944912

Genome context

Sequence
000001 AATTGTTCCA AGTCACTTAC ATGGAGCTAC ATTTACAGAC ACAAAGAGGA GCTGGACTGA TGTTTAGCTG TCTTGCACCA 000080
000081 GCTTGTATTT TTGGATTAGC TAGTATCCCA GGAAAAGGGT TTGTATCCAA GATAATCCTT CCTCTGGACT GGTTTTCTTT 000160
000161 CTGTGTTTTG ACCCTCCCAG AAGCAGAAGA GTCATCTTGC CTCTCAGTAA AAGCAGAGAA GGGGAAATAT CTTTGAATTG 000240
000241 CTGGGTAGGA TAGCTTCTCT CGCTCAGCAT TTTTTCTGTT CTCCACAAGA AAACCTCTTA CTGCAAAATA TGTTTGTTGG 000320
000321 TGGATCACAG ACTTCAAACT CACAGGACCT TATCTCCGAT ACACTGAAAG TAAATGCAAC ATATTAAATA GTTTAATCAA 000400
000401 AATGAGGTAG AGAGGCTATG AAGTGTCTGT AAACATTTGG AATCTGATGC AAAGAAGCAC GAGGACCTTC ATTTTCACTC 000480
000481 CAGTGGTTGT GGTGACTGTG GAGAGGAATA CACAACAGAA GAAACACGCA CCCACATGAA CACACACGGG CACAAAGAGA 000560
000561 TACTACAGAA TGGGGAGCAA TAAATTATTG GCCTAATTCG TGCCTGGTTC CAAAGAAAAG GGGCAGTTGG AGCCCCCCAG 000640
000641 GCCATCTCAC CGCCTTTCCC CTGACTGGGT CCCTCCATCT GGTAGTTGCC AGCCAATGTT GGAGGTCTGA CCCATGCTTT 000720
000721 TCTCTCCTTG GGAAAAGACA TGACTTGCTC CTCCTTGTCT TCTACTATGA TTGTGAGGCC TTCTCAGCCG CTTGGAACTG 000800
000801 TGAGTCTAAT TAAACCTTTT TCTTTTGTAC ATTGCCCAGT CTCAGGTATG TCTTTATCTT AGAAAACAGA CTCATACAGT 000880
000881 AAATTGGTGC CAGTAGAGTG GGGTGTTGCT GAAAAGATAC CTGAAAATGT GGGGGCGACT TTGGAACTGG GTAACAGGCA 000960
000961 GAGGTTGGAA CAATTTGGAA AGCTCAGAAG AAGACAAGAA AATTTGGGAA AGTTTGTAAC TTCCTAGAGA CTTGTTGAAT 001040
001041 GACTTTGACC ACAAGCCTGA CAGCAATATG GACAATAAGG TCTAGGCTGA AGTGGTCTCA GATGGAGATG AGGAAGTTGT 001120
001121 TGGGAACTGG AGCAAAGATA TGTGTTGTTG TTGTGTTTTA GCAAAGAGAC TGGTGGCATT TTGCCCCTGC CCTAGAAATC 001200
001201 TGGGAAACTT TGAACTTGAG AGAGATGATT TAGGGTATCT GGTGGAAGAA ATTTCTAAGC ATCAAAACAT CTAAGGGGTG 001280
001281 ACTTGGGATG TGTTAATTCA GACTTGGGAT GTTAAAGGTA TTCAGTTTTA TAAAGGAAGC AGAGCATAAA AGTTTGTAAA 001360
001361 ATTTACAGCC TGACAATGTG ATAGAAAAGA AAATCCCATT TTCTGAGGAG AAATTCAAGT TGGCTACAGA AATTTGCATA 001440
001441 ATTAATGAGG AGCTGAATGT TAATCCCCAA GACAATGGGG AAAATGTCTC CAGGGCATGT CAGAGGTCTT CTTGGCAGCC 001520
001521 TCTCCCATCA CAGGTGTGGA GACCTAGGAA GAAAATATAG TTTCCTGGGC TGGGCCCAGG GTCTCCGTGC TGTGCACAGT 001600
001601 CCAGGGACTT GGTGCCCTGC ATCCCAGCTG CTCCAGCCAT GACTAAAAGG GGTCAAGGTA CAGCTTGGGC CATGGCTTCA 001680
001681 AAGGGTGTAA GCCCCAAGCT TTGACAGCCC CAACATGATG TCGAGCCTGA GGGTGCACAG AAGTCAAGAA TTGGGGTTTG 001760
001761 GGAACCTCCA CCTAGATTTC AGAAGATATA TGGAAACGCC TGGATGCCCA GGCATAAGTT TGTTGCAGGG GCAGGGTGCT 001840
001841 TGTGGAGAAC CTCTGCTAGC ACAGAAGGGA AATGTGGGTC AGAGCCCCCA CACACAGTGC CTACTGGGGC ACTGCCTAGT 001920
001921 GAAGCTGTGA GAAGAGGGCC ACTGTCCTTC AGACCCCAGA ATGGTAGATC CACTGACAAT TTGCACACTT CACCTGGAAA 002000
002001 AGGTGGCTGT ACTCTGCAAA GCTACAGAGA TGGAGCTGCC CAAGACCATG GGAACCCACC TCTTGCATCA GCATGACCTG 002080
002081 GATATGAGAC ATGGAGTCAA AGGAGATCAT TTTGGAGCTT TAAGATTTGA CTGCCCTGCT GGAGTTTGGA CTTGCATGGG 002160
002161 GCCTGTAACT CCTTTGCTTT GGCCAATTTC TCCCACTTGG AATGGCTGTA TTTACCCAAT GCCTATACCC CCTTTGTATC 002240
002241 TAGGAAGTAA TTAACTTGCT TTTGATTTTA CAGGTTTATA GGTGGAAGGG ACTTGCCTTG TCTCAGACAA GACTTTGGAC 002320
002321 TGTTGACTTT TCAGTTAATA TTGAAATAAG TTAAGCCTTT GGGGGACTAC TGGGAAGGCA TGATTGGTTC TGAAATGTGA 002400
002401 GGACATGAGA TTTGGGAGGG GTCAGGGGCA GAATGATATG GTTTGGCTCT ATGTCTCCAC CTAAATCTCA TCTTAAATTG 002480
002481 TACTCCAATA ATTCCCACTT GTTGTGGGAA GAACCTGGTG GGAGATAATT GAATCATGGG GGCAGTTTGC CCCATACTGT 002560
002561 TCTCATGGCA GTGAATAAGT CTCATGAGAT CTGATGGTTT GATAAGGGGA AACTCATTTC ACTTGGCTCT CATTCTCTCT 002640
002641 TTTTGCCTGT TGCCATTCAT GTAAGAAGTG ACTTGCTCCT CCTTGTCTTC CACCATCATT ATGAGGCTTC TGCAGCCACG 002720
002721 TGGAACTGTG AGTCCATTAA ACCTTTTTCT TTTGT
[back to top]

Predicted Small Protein

Name ENST00000424943.1_smProtein_20:235
Length 72
Molecular weight 7693.0752
Aromaticity 0.0985915492958
Instability index 49.9704225352
Isoelectric point 6.52679443359
Runs 14
Runs residual 0.048628613788
Runs probability 0.0309637368461
Amino acid sequence MELHLQTQRGAGLMFSCLAPACIFGLASIPGKGFVSKIILPLDWFSFCVLTLPEAEESSC
LSVKAEKGKYL
Secondary structure LEEEHHHHHLHHHHHHHHHHHHHHLLEELLLLLLEEEEEELLLLEEEEEELLLLLLLLLL
LLLHHHHLLLL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
LLLLLLLLLLL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii
iiiiiiiiiii