ENST00000424943.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000424943.1 |
Source |
Gencode19 |
Same with |
lnc-RWDD3-4:1,NONHSAT004671 |
Classification |
intergenic |
Length |
2755 nt |
Genomic location |
chr1+:95940293..95944912 |
Exon number |
4 |
Exons |
95940293..95940731,95940870..95940930,95942300..95942536,95942895..95944912 |
Genome context |
|
Sequence |
000001 AATTGTTCCA AGTCACTTAC ATGGAGCTAC ATTTACAGAC ACAAAGAGGA GCTGGACTGA TGTTTAGCTG TCTTGCACCA 000080
000081 GCTTGTATTT TTGGATTAGC TAGTATCCCA GGAAAAGGGT TTGTATCCAA GATAATCCTT CCTCTGGACT GGTTTTCTTT 000160 000161 CTGTGTTTTG ACCCTCCCAG AAGCAGAAGA GTCATCTTGC CTCTCAGTAA AAGCAGAGAA GGGGAAATAT CTTTGAATTG 000240 000241 CTGGGTAGGA TAGCTTCTCT CGCTCAGCAT TTTTTCTGTT CTCCACAAGA AAACCTCTTA CTGCAAAATA TGTTTGTTGG 000320 000321 TGGATCACAG ACTTCAAACT CACAGGACCT TATCTCCGAT ACACTGAAAG TAAATGCAAC ATATTAAATA GTTTAATCAA 000400 000401 AATGAGGTAG AGAGGCTATG AAGTGTCTGT AAACATTTGG AATCTGATGC AAAGAAGCAC GAGGACCTTC ATTTTCACTC 000480 000481 CAGTGGTTGT GGTGACTGTG GAGAGGAATA CACAACAGAA GAAACACGCA CCCACATGAA CACACACGGG CACAAAGAGA 000560 000561 TACTACAGAA TGGGGAGCAA TAAATTATTG GCCTAATTCG TGCCTGGTTC CAAAGAAAAG GGGCAGTTGG AGCCCCCCAG 000640 000641 GCCATCTCAC CGCCTTTCCC CTGACTGGGT CCCTCCATCT GGTAGTTGCC AGCCAATGTT GGAGGTCTGA CCCATGCTTT 000720 000721 TCTCTCCTTG GGAAAAGACA TGACTTGCTC CTCCTTGTCT TCTACTATGA TTGTGAGGCC TTCTCAGCCG CTTGGAACTG 000800 000801 TGAGTCTAAT TAAACCTTTT TCTTTTGTAC ATTGCCCAGT CTCAGGTATG TCTTTATCTT AGAAAACAGA CTCATACAGT 000880 000881 AAATTGGTGC CAGTAGAGTG GGGTGTTGCT GAAAAGATAC CTGAAAATGT GGGGGCGACT TTGGAACTGG GTAACAGGCA 000960 000961 GAGGTTGGAA CAATTTGGAA AGCTCAGAAG AAGACAAGAA AATTTGGGAA AGTTTGTAAC TTCCTAGAGA CTTGTTGAAT 001040 001041 GACTTTGACC ACAAGCCTGA CAGCAATATG GACAATAAGG TCTAGGCTGA AGTGGTCTCA GATGGAGATG AGGAAGTTGT 001120 001121 TGGGAACTGG AGCAAAGATA TGTGTTGTTG TTGTGTTTTA GCAAAGAGAC TGGTGGCATT TTGCCCCTGC CCTAGAAATC 001200 001201 TGGGAAACTT TGAACTTGAG AGAGATGATT TAGGGTATCT GGTGGAAGAA ATTTCTAAGC ATCAAAACAT CTAAGGGGTG 001280 001281 ACTTGGGATG TGTTAATTCA GACTTGGGAT GTTAAAGGTA TTCAGTTTTA TAAAGGAAGC AGAGCATAAA AGTTTGTAAA 001360 001361 ATTTACAGCC TGACAATGTG ATAGAAAAGA AAATCCCATT TTCTGAGGAG AAATTCAAGT TGGCTACAGA AATTTGCATA 001440 001441 ATTAATGAGG AGCTGAATGT TAATCCCCAA GACAATGGGG AAAATGTCTC CAGGGCATGT CAGAGGTCTT CTTGGCAGCC 001520 001521 TCTCCCATCA CAGGTGTGGA GACCTAGGAA GAAAATATAG TTTCCTGGGC TGGGCCCAGG GTCTCCGTGC TGTGCACAGT 001600 001601 CCAGGGACTT GGTGCCCTGC ATCCCAGCTG CTCCAGCCAT GACTAAAAGG GGTCAAGGTA CAGCTTGGGC CATGGCTTCA 001680 001681 AAGGGTGTAA GCCCCAAGCT TTGACAGCCC CAACATGATG TCGAGCCTGA GGGTGCACAG AAGTCAAGAA TTGGGGTTTG 001760 001761 GGAACCTCCA CCTAGATTTC AGAAGATATA TGGAAACGCC TGGATGCCCA GGCATAAGTT TGTTGCAGGG GCAGGGTGCT 001840 001841 TGTGGAGAAC CTCTGCTAGC ACAGAAGGGA AATGTGGGTC AGAGCCCCCA CACACAGTGC CTACTGGGGC ACTGCCTAGT 001920 001921 GAAGCTGTGA GAAGAGGGCC ACTGTCCTTC AGACCCCAGA ATGGTAGATC CACTGACAAT TTGCACACTT CACCTGGAAA 002000 002001 AGGTGGCTGT ACTCTGCAAA GCTACAGAGA TGGAGCTGCC CAAGACCATG GGAACCCACC TCTTGCATCA GCATGACCTG 002080 002081 GATATGAGAC ATGGAGTCAA AGGAGATCAT TTTGGAGCTT TAAGATTTGA CTGCCCTGCT GGAGTTTGGA CTTGCATGGG 002160 002161 GCCTGTAACT CCTTTGCTTT GGCCAATTTC TCCCACTTGG AATGGCTGTA TTTACCCAAT GCCTATACCC CCTTTGTATC 002240 002241 TAGGAAGTAA TTAACTTGCT TTTGATTTTA CAGGTTTATA GGTGGAAGGG ACTTGCCTTG TCTCAGACAA GACTTTGGAC 002320 002321 TGTTGACTTT TCAGTTAATA TTGAAATAAG TTAAGCCTTT GGGGGACTAC TGGGAAGGCA TGATTGGTTC TGAAATGTGA 002400 002401 GGACATGAGA TTTGGGAGGG GTCAGGGGCA GAATGATATG GTTTGGCTCT ATGTCTCCAC CTAAATCTCA TCTTAAATTG 002480 002481 TACTCCAATA ATTCCCACTT GTTGTGGGAA GAACCTGGTG GGAGATAATT GAATCATGGG GGCAGTTTGC CCCATACTGT 002560 002561 TCTCATGGCA GTGAATAAGT CTCATGAGAT CTGATGGTTT GATAAGGGGA AACTCATTTC ACTTGGCTCT CATTCTCTCT 002640 002641 TTTTGCCTGT TGCCATTCAT GTAAGAAGTG ACTTGCTCCT CCTTGTCTTC CACCATCATT ATGAGGCTTC TGCAGCCACG 002720 002721 TGGAACTGTG AGTCCATTAA ACCTTTTTCT TTTGT |
Predicted Small Protein
Name | ENST00000424943.1_smProtein_20:235 |
Length | 72 |
Molecular weight | 7693.0752 |
Aromaticity | 0.0985915492958 |
Instability index | 49.9704225352 |
Isoelectric point | 6.52679443359 |
Runs | 14 |
Runs residual | 0.048628613788 |
Runs probability | 0.0309637368461 |
Amino acid sequence | MELHLQTQRGAGLMFSCLAPACIFGLASIPGKGFVSKIILPLDWFSFCVLTLPEAEESSC LSVKAEKGKYL |
Secondary structure | LEEEHHHHHLHHHHHHHHHHHHHHLLEELLLLLLEEEEEELLLLEEEEEELLLLLLLLLL LLLHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii iiiiiiiiiii |