ENST00000426428.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000426428.1

Source

Gencode19

Same with

lnc-CAMK2N1-2:4

Classification

intergenic

Length

2993 nt

Genomic location

chr1-:20687072..20755275

Exon number

12

Exons

20687072..20688534,20688637..20688887,20700088..20700231,20703874..20704002,20704804..20704925,20705466..20705519,20724976..20725280,20725973..20726042,20727428..20727480,20732068..20732187,20732680..20732762,20755077..20755275

Genome context

Sequence
000001 AGGGAGCTCT AGTGGAGAGA CAAGATTCGT GCATGAAATA ATTACGACTG TTGTAGAAAA AAGAAAAGCC TGTAGGTCTC 000080
000081 CCTTCCTCCC TCCTTCTCTC TGTCTACCTC AGCATTTCTG GGGTTCACTC TGCTCTGGGT ACTGTGTAAA GGACTCCACA 000160
000161 GCCATCAACT TCCCTTCATC CTTGCCGTGT CTTTGAAAGA GCTGAGATTT CTTTACATCA CAGTGGTTCA AGGAGAAAAA 000240
000241 CACAGCCAGA TCCTTCCTCA TCTCAACATA AATTAAACCC AGAGGCAGTC AGCGCCACAG TCCACACTCG TAACCGTTAC 000320
000321 ACTCACCTGG AAATAAAAGT ATTTTTGTGC GGGGACTGCA AGGACTAAGC CCGGCCGCAC TCCGAGTTTC TCCTCCTCAC 000400
000401 AGATAGGGGC TGAGGCTCAG AGAGGGCAAG TGACCTGCCC AAAGTCACAC AGCCGTGACT CATTGCTCAG GTGAGGAAAC 000480
000481 TGAGGCTCAG AGAGGGTCCG TGGCATGTCC AAGGTTACTC TGCTGTTAAT TGTTTTCTTG GCACTCTCTC CCTTCTCACC 000560
000561 TGTGACTACC TGAGTGTCCC CAGAGGCAAG GAACTATGTG AGCCACTCCA GTGTTCCCAG CCCCAAGGCC AGGCACAGTG 000640
000641 GACATTTATT GCTGAATGAA TGAATCAAGA GAGAGGATCA GAAAGCTGCA GAGGATGATA GATCTGCAAA ATTCTCCCTG 000720
000721 GGTGAGGCCC AGGCTCAGCT TCCAGAACAG CTCCATCTGT CTCCCACTCA CTGAGATTGA ACTAATGTCC CACAGTTGGA 000800
000801 CAGACCTGAA ATTGAGCTCT GTGATTTTGG ATGTGCCTTT TGCCTTCCAC GGTGATTGTG AGGCCTCTCA AGCCACGTGG 000880
000881 AACTATGGAG TCTCAATATG CTGCCCAGGC TGGAGTGTGG TGGTGCCAAC ATAGCTCATT GCAGCCTTGA ACACCCAGGC 000960
000961 TCAAGTGATC CTCCTATCTC AGCCTCCCAA GTAGCTGGGA CTACAGGTGC TCCATTAAAT CAGGAACCTT GTTGCTTCTG 001040
001041 GTATCTGGGG TGTCCCACCG CTACCCCCAT GTGAGTGCCT GGCACATATA GATACTTGAT ACCTGCTTGC TGAATAAATG 001120
001121 AATAAGTGCA ACTTGACTGG ATGATGAGAG GCACAGCTGA GTCCGGAGCA GACTGAGCCA CCTAAGAGGG GAGGAACCGC 001200
001201 TGCAGAGAAA CCGTGTTAAG CCTTTTTGAA GTTCCAGAGG GAGAACAAGA GAGCGGAGGC TCCTGGTGGC TGGTGACAGG 001280
001281 AGGTCTCTTC TAAGTGCCTT TCACCTAACA GCATCCTGCC CTGGAGGAGA CTTCCAAGCA TGATTGGAGC TCCCAATCCG 001360
001361 ATGGGGGAGA CAGGACACAC ATACGTGTAA TAAGAGTGTC CCCTGTGAGG CTGCTGCTGA GAGAAGCTCT GGGAAGTGTT 001440
001441 CCTGAGAGTG GCTTCCCATG GAGTTTGGAG GAGGAGGAGT GGGCCAAGCA GGGAAGGACC AAGAGGTCAC CTTCTCCTTT 001520
001521 CCAGCCCCAG ATGCCTTTGG CAGGAGCTGG TCCGGGCCTG GAAGGCAGTG CACGCCCACA GCGCCCTCTG CTGAACGGTA 001600
001601 TCAGAACAGC AGGCTTGGAG GGCGAAGGCA ATTCCTGCAA AGGATCCCTG GTTTCCTACC CATGGGAAAC CCCAGATTCT 001680
001681 GAAGCCAGGA ATGAAGGGTA GATGGAGCCT GGGTCAGCAC CCGAGAGGAC CCATATGTGC AACCTGGAGG ATCTTGGAGC 001760
001761 TTGGGAGTAG CGTAGGGGGT GGTTAGTTCA GTTCGGGATG GCTGAGGAAG CCGTTTTAAA CAACTTTCAC CGAGATCTTA 001840
001841 CTGAGGGCTC AGGAACTTGG CATGGCCACC ATCCTGGGTA TCCAGGGCCC CTCCTTCCCC CAGGCTAGGA GAGGAACCCC 001920
001921 TCCCAGCAGA TGCCTTCCCA GACTACCCTT GTCTCACTTA TCATAGAGGA CGTGTGCCGC CTTCCTTCTC CCAGGCCCTG 002000
002001 GATCTGGGGT TGCTGGACTT GGTGCGTGGG TGGTCTGGAT GCTTCTAGGA TGAATTCATA ATTGGGAGAT TCTAGGTGAT 002080
002081 GCTCAGATGG AAATGAGGGC AACTGCTGCT TGATGGCAGA ACAACAGAGC TTGGCAGAGC TAGGCTGGAC TCGACTTGGC 002160
002161 ATTTTCTCTC CGTTTCAGAC CAGGATACGG ATTAATTGAG CCCAGCGGAG CTCAGGTTTC CCGGGGCGGG GGGCAAGCAG 002240
002241 TGCCTTGGAG GGAGTGGGGT ACTGTGGGAC GGAGGACCCA GGAGACCCAG AATCCTGAAC TGTCGGGCTG ACTTCGTCTC 002320
002321 CTACAGAGTT CTTTAACCCA GGAGCCCCGA GAACCTGCTT TCCTCAATGT GTTCTTCACC CGTGAGGGAC TAGGACATCC 002400
002401 TAATTGCCAT CCCAGCAGGA CACACACACA GACACACACA CACACACACA CACACACACA CACACACACA CACACAAAAC 002480
002481 TGGCCTTTAC AGGATGCACA GTGGAGGAAA AGAACAAAGA AGCACGTGTC TTACAAAGGG AGAGGCAGTG CCAGGCTCAT 002560
002561 AGAAGTCAGT GAGGTACTAC AAAGGGGACG TCAGGTCCCC CCAGCAGCCT AGAGCCATGG TGAGGGCCAG GGAGAGGGCT 002640
002641 TGTCTATCAC AGTGACAGTC CATTATCCAG CTGAACATCA CCTAGGAGGG CCATGCATGT GAACAGGGTT TCTGTTTACC 002720
002721 ATGTCAGCTT CAGCCTGGGG GCTCCTCCAA TTTTTCCCAT TAGGAGCCCT TAGCACATCG CTGCAATGTT TCTGGCTTAT 002800
002801 TGGGAATTCC TATTATAGTC CATTGTCCTC CCTCAAATCT GAAAAGGGAT GATTGATTTT GAGGAAACAA GGCAAGTTGC 002880
002881 TGAAGGATTT CTAAATGAGC CTTATGTTTG ATTTTGGGGT CAGTCTGTGT GGGTTCCAAG ACAAGATGGT GGCTGGTAAT 002960
002961 GATTTTCAAA TAAATATATT TTGTGATCAC GAA
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Predicted Small Protein

Name ENST00000426428.1_smProtein_1457:1681
Length 75
Molecular weight 8018.8736
Aromaticity 0.121621621622
Instability index 55.2378378378
Isoelectric point 10.6806030273
Runs 9
Runs residual 0.0210283454186
Runs probability 0.0452413197511
Amino acid sequence MEFGGGGVGQAGKDQEVTFSFPAPDAFGRSWSGPGRQCTPTAPSAERYQNSRLGGRRQFL
QRIPGFLPMGNPRF
Secondary structure LLLLLLEELLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLEEEEL
LLLLLLLLLLLLLL
PRMN -
PiMo -