ENST00000426428.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000426428.1 |
Source |
Gencode19 |
Same with |
lnc-CAMK2N1-2:4 |
Classification |
intergenic |
Length |
2993 nt |
Genomic location |
chr1-:20687072..20755275 |
Exon number |
12 |
Exons |
20687072..20688534,20688637..20688887,20700088..20700231,20703874..20704002,20704804..20704925,20705466..20705519,20724976..20725280,20725973..20726042,20727428..20727480,20732068..20732187,20732680..20732762,20755077..20755275 |
Genome context |
|
Sequence |
000001 AGGGAGCTCT AGTGGAGAGA CAAGATTCGT GCATGAAATA ATTACGACTG TTGTAGAAAA AAGAAAAGCC TGTAGGTCTC 000080
000081 CCTTCCTCCC TCCTTCTCTC TGTCTACCTC AGCATTTCTG GGGTTCACTC TGCTCTGGGT ACTGTGTAAA GGACTCCACA 000160 000161 GCCATCAACT TCCCTTCATC CTTGCCGTGT CTTTGAAAGA GCTGAGATTT CTTTACATCA CAGTGGTTCA AGGAGAAAAA 000240 000241 CACAGCCAGA TCCTTCCTCA TCTCAACATA AATTAAACCC AGAGGCAGTC AGCGCCACAG TCCACACTCG TAACCGTTAC 000320 000321 ACTCACCTGG AAATAAAAGT ATTTTTGTGC GGGGACTGCA AGGACTAAGC CCGGCCGCAC TCCGAGTTTC TCCTCCTCAC 000400 000401 AGATAGGGGC TGAGGCTCAG AGAGGGCAAG TGACCTGCCC AAAGTCACAC AGCCGTGACT CATTGCTCAG GTGAGGAAAC 000480 000481 TGAGGCTCAG AGAGGGTCCG TGGCATGTCC AAGGTTACTC TGCTGTTAAT TGTTTTCTTG GCACTCTCTC CCTTCTCACC 000560 000561 TGTGACTACC TGAGTGTCCC CAGAGGCAAG GAACTATGTG AGCCACTCCA GTGTTCCCAG CCCCAAGGCC AGGCACAGTG 000640 000641 GACATTTATT GCTGAATGAA TGAATCAAGA GAGAGGATCA GAAAGCTGCA GAGGATGATA GATCTGCAAA ATTCTCCCTG 000720 000721 GGTGAGGCCC AGGCTCAGCT TCCAGAACAG CTCCATCTGT CTCCCACTCA CTGAGATTGA ACTAATGTCC CACAGTTGGA 000800 000801 CAGACCTGAA ATTGAGCTCT GTGATTTTGG ATGTGCCTTT TGCCTTCCAC GGTGATTGTG AGGCCTCTCA AGCCACGTGG 000880 000881 AACTATGGAG TCTCAATATG CTGCCCAGGC TGGAGTGTGG TGGTGCCAAC ATAGCTCATT GCAGCCTTGA ACACCCAGGC 000960 000961 TCAAGTGATC CTCCTATCTC AGCCTCCCAA GTAGCTGGGA CTACAGGTGC TCCATTAAAT CAGGAACCTT GTTGCTTCTG 001040 001041 GTATCTGGGG TGTCCCACCG CTACCCCCAT GTGAGTGCCT GGCACATATA GATACTTGAT ACCTGCTTGC TGAATAAATG 001120 001121 AATAAGTGCA ACTTGACTGG ATGATGAGAG GCACAGCTGA GTCCGGAGCA GACTGAGCCA CCTAAGAGGG GAGGAACCGC 001200 001201 TGCAGAGAAA CCGTGTTAAG CCTTTTTGAA GTTCCAGAGG GAGAACAAGA GAGCGGAGGC TCCTGGTGGC TGGTGACAGG 001280 001281 AGGTCTCTTC TAAGTGCCTT TCACCTAACA GCATCCTGCC CTGGAGGAGA CTTCCAAGCA TGATTGGAGC TCCCAATCCG 001360 001361 ATGGGGGAGA CAGGACACAC ATACGTGTAA TAAGAGTGTC CCCTGTGAGG CTGCTGCTGA GAGAAGCTCT GGGAAGTGTT 001440 001441 CCTGAGAGTG GCTTCCCATG GAGTTTGGAG GAGGAGGAGT GGGCCAAGCA GGGAAGGACC AAGAGGTCAC CTTCTCCTTT 001520 001521 CCAGCCCCAG ATGCCTTTGG CAGGAGCTGG TCCGGGCCTG GAAGGCAGTG CACGCCCACA GCGCCCTCTG CTGAACGGTA 001600 001601 TCAGAACAGC AGGCTTGGAG GGCGAAGGCA ATTCCTGCAA AGGATCCCTG GTTTCCTACC CATGGGAAAC CCCAGATTCT 001680 001681 GAAGCCAGGA ATGAAGGGTA GATGGAGCCT GGGTCAGCAC CCGAGAGGAC CCATATGTGC AACCTGGAGG ATCTTGGAGC 001760 001761 TTGGGAGTAG CGTAGGGGGT GGTTAGTTCA GTTCGGGATG GCTGAGGAAG CCGTTTTAAA CAACTTTCAC CGAGATCTTA 001840 001841 CTGAGGGCTC AGGAACTTGG CATGGCCACC ATCCTGGGTA TCCAGGGCCC CTCCTTCCCC CAGGCTAGGA GAGGAACCCC 001920 001921 TCCCAGCAGA TGCCTTCCCA GACTACCCTT GTCTCACTTA TCATAGAGGA CGTGTGCCGC CTTCCTTCTC CCAGGCCCTG 002000 002001 GATCTGGGGT TGCTGGACTT GGTGCGTGGG TGGTCTGGAT GCTTCTAGGA TGAATTCATA ATTGGGAGAT TCTAGGTGAT 002080 002081 GCTCAGATGG AAATGAGGGC AACTGCTGCT TGATGGCAGA ACAACAGAGC TTGGCAGAGC TAGGCTGGAC TCGACTTGGC 002160 002161 ATTTTCTCTC CGTTTCAGAC CAGGATACGG ATTAATTGAG CCCAGCGGAG CTCAGGTTTC CCGGGGCGGG GGGCAAGCAG 002240 002241 TGCCTTGGAG GGAGTGGGGT ACTGTGGGAC GGAGGACCCA GGAGACCCAG AATCCTGAAC TGTCGGGCTG ACTTCGTCTC 002320 002321 CTACAGAGTT CTTTAACCCA GGAGCCCCGA GAACCTGCTT TCCTCAATGT GTTCTTCACC CGTGAGGGAC TAGGACATCC 002400 002401 TAATTGCCAT CCCAGCAGGA CACACACACA GACACACACA CACACACACA CACACACACA CACACACACA CACACAAAAC 002480 002481 TGGCCTTTAC AGGATGCACA GTGGAGGAAA AGAACAAAGA AGCACGTGTC TTACAAAGGG AGAGGCAGTG CCAGGCTCAT 002560 002561 AGAAGTCAGT GAGGTACTAC AAAGGGGACG TCAGGTCCCC CCAGCAGCCT AGAGCCATGG TGAGGGCCAG GGAGAGGGCT 002640 002641 TGTCTATCAC AGTGACAGTC CATTATCCAG CTGAACATCA CCTAGGAGGG CCATGCATGT GAACAGGGTT TCTGTTTACC 002720 002721 ATGTCAGCTT CAGCCTGGGG GCTCCTCCAA TTTTTCCCAT TAGGAGCCCT TAGCACATCG CTGCAATGTT TCTGGCTTAT 002800 002801 TGGGAATTCC TATTATAGTC CATTGTCCTC CCTCAAATCT GAAAAGGGAT GATTGATTTT GAGGAAACAA GGCAAGTTGC 002880 002881 TGAAGGATTT CTAAATGAGC CTTATGTTTG ATTTTGGGGT CAGTCTGTGT GGGTTCCAAG ACAAGATGGT GGCTGGTAAT 002960 002961 GATTTTCAAA TAAATATATT TTGTGATCAC GAA |
Predicted Small Protein
Name | ENST00000426428.1_smProtein_1457:1681 |
Length | 75 |
Molecular weight | 8018.8736 |
Aromaticity | 0.121621621622 |
Instability index | 55.2378378378 |
Isoelectric point | 10.6806030273 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0452413197511 |
Amino acid sequence | MEFGGGGVGQAGKDQEVTFSFPAPDAFGRSWSGPGRQCTPTAPSAERYQNSRLGGRRQFL QRIPGFLPMGNPRF |
Secondary structure | LLLLLLEELLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLEEEEL LLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |