ENST00000427176.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000427176.1 |
Source |
Gencode19 |
Same with |
lnc-CEP170-3:1,NONHSAT010576 |
Classification |
intergenic |
Length |
792 nt |
Genomic location |
chr1-:243169147..243170770 |
Exon number |
3 |
Exons |
243169147..243169576,243169714..243169980,243170676..243170770 |
Genome context |
|
Sequence |
000001 TAGACCTTAG TTTAGGTATT GGGGCCAAAG GATGGATGAC CATTTCAAAT GATCCAGGCT AAACCAGCCT GGAGGAGAGC 000080
000081 TCAAAGTCTG ATCTGGTACG TTGCAAGGAT AGAGGGACAG AAAGTTCAGC AAGTGGCCAA TGAATAGAAG TCTGGTTTTC 000160 000161 TGAGCATCCT TGCAGCTGCA GGCTTCAGTC TACCAGAGAA TGTGAGGTGT TATTCTTCTA GGGCAGTGGT TAGAAAAGAA 000240 000241 AATGAAAGTA GCAGTACTCT TTTCCTAATT CAACCATAGA TGGATGACCA GAATTTGTAA TCCATAAGGT AGAAGCTGCT 000320 000321 GTGCCTGAGG AAATAGAAAG TGGGCAGAGG TGGAGGGGCA AGAGCAGGAG GTGACCAATC TTGGAAATAA GGAAGGGAGA 000400 000401 GAGGCAGCCA AGCCAGCAGC TCCTGGAGCC AGCTCTTGGA AGTTCCCCAG GAGCTGTCCA GTCTTATGTC ATGTCTAGTC 000480 000481 AGCAGAGTCC CAAAGAAGCT TGTCATTCTC TAGGCATTTG TGCTTACATT CTGATGGGCC TGATAGCAGG GAGATGACAT 000560 000561 GGAGCCCAGG CAGAACAGCT GAGATTTCTA CTGGTCATGA CCTCCATCTT CTCCTTCATA CCTTTCCTAC CTTTCTTTTT 000640 000641 CCATGCATTC AACAGACATT TATTACCCAA TAAGTGCCAG ATAGTAAGCC AGGACCTGGG GAGAGCAGAT GAGTAAGACA 000720 000721 CCGTCTCTGT CTCTCAGGAA CTCTCAGATT CTTAGGGACA CATGTACATC CTAATAAACA CAGTGCATCT CA |
Predicted Small Protein
Name | ENST00000427176.1_smProtein_596:715 |
Length | 40 |
Molecular weight | 4585.2682 |
Aromaticity | 0.179487179487 |
Instability index | 42.6205128205 |
Isoelectric point | 6.70159912109 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0550508491684 |
Amino acid sequence | MTSIFSFIPFLPFFFHAFNRHLLPNKCQIVSQDLGRADE |
Secondary structure | LLEELLLLLLLHHHHHHHHLLLLLLLLEEEELLLLLLLL |
PRMN | LLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PiMo | i?????????????????????????????????????? |