ENST00000428191.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000428191.1 |
Source |
Gencode19 |
Same with |
lnc-SF3B1-1:1 |
Classification |
intronic(S) |
Length |
1069 nt |
Genomic location |
chr2-:198115582..198167243 |
Exon number |
6 |
Exons |
198115582..198115716,198161029..198161123,198161250..198161296,198164206..198164259,198165687..198166137,198166957..198167243 |
Genome context |
|
Sequence |
000001 GTTTGGGAAA GAGAATATTG GAATTCATAT TTCTTTAAAT CATTCTTTTA AACTTTTAAT TTTTATGTAG TTTTAGTACA 000080
000081 TCTTATTTGC TAGTACTGTG TCATCTTTTT GGCTGTATTT TTCACTGGCT GCCACCTGGC CAAATCACCA CTTGGGTTAT 000160 000161 AACAGCAGCC TCTGACTGGT CTCCTTCCGT CTGACCTTGG CCCCTGCACT CTACTCTCAA CGTAGCTCTC AGAGTGATGG 000240 000241 AACTCAGAAC TTGTCACTCC TGCTCAAAAA CTTCCAGTTT CACCCAGGGG AAGTATCAAG GTGACATGAG GGGACAGGAA 000320 000321 ATATTGTCCC TAAATGTTCT AAGAGTGGAT CTCCCATGTA TTCAAGCAAT CGAGGGGTGT TTAATGAGCT CCATCTACAT 000400 000401 AGCAATGATA CAGCATAGCT CTGCTGGGGC TCTCTGCTCT CCCCTTCTCC ACAAAAGGGA AGGACAGGTA AGAACAGGCA 000480 000481 CAATAAAATA GAAACCAGAC AGAAAGAATT GGGAACAAGG AGACAAGACA AGAATCATGC TTTACGTGAT TTAATCCTAA 000560 000561 TATTTTTATG AGAGGATGGC TATCATCATT TCATTTTAAA GATGAGGAAA ATGAAGCCGG GTGCGGTGGC TCATGCCTGT 000640 000641 AATCCCAGCA CTTTGGAAGG CCGAGGAAGA TGGCTCACCT GAGGTCAGGA GTTCGAGACC AGCCTGGCCA GAGAGATGGC 000720 000721 CAGAGATGGC TAGAGATGGT TGCTGCAAAT GCCATTATTT CATTCCTTTT TATGGCTGAG TAGTATTCCA TGAGGGAAGG 000800 000801 AATTAGGAGC GGGAAGGAGA TTGACTGTTA GTTTCTTAGG ATTGGACTAA CAAAAGTGGA GGTTGTTACT TACACTGCAA 000880 000881 AAGAAACAAC CAGAGCTGTG TCACTCAGAA GGCTGAAAAG AATCAGGCTG ACAGCATAAT GCAGTGAAGA TGGGTGAAGA 000960 000961 GAGATGTGTT TCATCTGAAA TTTGAAGGGC TTTACAACTC TTCTCCTTTA ACTAACTTAC CATCCTTTAA CTAACTTACC 001040 001041 ACCCAAAATG AATTCTGTAG CCTTTGTCA |
Predicted Small Protein
Name | ENST00000428191.1_smProtein_236:490 |
Length | 85 |
Molecular weight | 9228.6864 |
Aromaticity | 0.0357142857143 |
Instability index | 51.5202380952 |
Isoelectric point | 8.72052001953 |
Runs | 15 |
Runs residual | 0.0445859872611 |
Runs probability | 0.0260731319555 |
Amino acid sequence | MELRTCHSCSKTSSFTQGKYQGDMRGQEILSLNVLRVDLPCIQAIEGCLMSSIYIAMIQH SSAGALCSPLLHKREGQVRTGTIK |
Secondary structure | LEEEEELLLLLLLLLLLLLEELLLLLLEEEEELEEELLLLHHHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLEEELEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiiiiiiiiiiii |