ENST00000428289.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000428289.1 |
Source |
Gencode19 |
Same with |
lnc-HIST2H3D-1:1,NONHSAT006249 |
Classification |
intronic(S),antisense |
Length |
3543 nt |
Genomic location |
chr1-:149757215..149764576 |
Exon number |
2 |
Exons |
149757215..149759694,149763514..149764576 |
Genome context |
|
Sequence |
000001 GCGGGGTTGG AGGGACTCAG CTACGCGCCT GGGGAGGCCG CGGGCCCTCG CAGACTACCG AACTTCCATT CTGCCGCCGG 000080
000081 GTTTTCACAC CTGCCGGCCC CGAGGAAACA ATGACGTTGG GATTTTGGGG GGCCGCCCCT TGACTCGGGC GAATGGGACA 000160 000161 CGAACGGCGA CCCCTTGCTC TCTTCCATCC GCCTGCCGCC GTTGCTGCCC ACCGACTCCT ACAGCTCATT TCTCGCTCCT 000240 000241 GCAGCCTCCA GGAATGCAAA TAATTTCTCA CTGGGTTTTG GCGGGGGCGC GGAGCTGCGG AGAAGCGCGC GCCCAACAGC 000320 000321 TTTCGCCGCA GCTGGGTCCC CGGGCGCTGG CGGCTGCGGC CCCCAGATAC AGGCGGAGGC TGCAATATGC ACATGCGGCC 000400 000401 ACAGTGTGGC GCCAGGGGCC CGCCGCGGGA CACGCTCGGA GCGCGACGCC CCATCCCATC ATTTACGGAT CAAACCAAAT 000480 000481 AATCTAGAAT CAAGTTGCTG TGTGTGTCAT ACTCCTCCTG TTTTTTTTCC CTAAACTTTT AGTAGAGTCA TTTACATAGT 000560 000561 TCAGTTTTTA CCTCAGCTAT GTTACACAGT GGCAGGAAAA TATTTTGTCT CCAAACTACA GCCCAAGTAT GAGAGCAGCG 000640 000641 TATCCTGAAG CTAATTAGTA ACCAGAAAAT CAGGAAGGTA AAGCAAATCT CTGGAGGCAA GATCTGGACT CTATGGTATC 000720 000721 GCCGCTTCTC CCCACTTGAA GCGTCTCTTT GCAGTGCCGC ACTTGGAGAT TTGGACTTAA TCGTTAAACA AACAGAACAG 000800 000801 TTACATTCTG CCTTCCTACA GGGCAGGGGC CTAGGACTGG CAGCATTTTT GTTGTCTCTA GAAATAGAGG GGTTATGAGA 000880 000881 GAGCCTCAAA AGAGAGGGCA AGAATAACAC ATCCATTTCT CATCATGAGT TACCCCCTTG TATGCCTAGA ACGCGTATGG 000960 000961 AGACATTCTC TTTTAGTAAA GTCAAAGAGA AAAGCCATGA ACTAAGTATC CTGAACACAG AGGCGTGAGC CCTCTCAGTC 001040 001041 TCACAGTCCC TTAGGAGTCA TTTATCTCAG AAGTTGGTTG AAACAAAAAC AGTTCATACA GCATGGTAGG CAGAATTCTA 001120 001121 AAATGATCCC AATGACTCAC TCCCTTGCAT AATCCCCTTG AGTGTGGGTG GAACCTATGA CTTGCTTCTA GCCAACAGAA 001200 001201 TATGACAAGG GTGATGAAAT GTCACTCTTG GGATTGCTAC ATTATGTAAG ACTCTATCTT AGCAGTCTGG ATGGAAAGTC 001280 001281 TCCTCCTGAA CTTGAAGAGG TAAGCTGCCA TGCCAGGAGA GGGCCTACAA GAGTGCCACA AGGCAAGGGC CTCTAGGAGC 001360 001361 TGAGAGTGGC CCCCCACTGA TGGGCAGCAA GAAAGCAGGA ACCTCAGTCC TACAACCACA AAGAACTGAA TTCTGCCAGT 001440 001441 GACCTTGTGA GCCTGGAAGA GCTGCAAAAA GAAACACAGC AAAGTCAACA CCCTAACTGC AGCCTTGGAA GACTCTCAGC 001520 001521 AGAGCACTCA GCTAAGCTGT GATGGGAGTC CTGACCCATG GAAACTGGAA GATCTTAAAT GTATGTTGTT GCTAAATTTG 001600 001601 TTACACAGCA ATAGAAAACA AATACACTCC AACTCTTGAC AAATTTGTTA ATAGGACCAC GCATCCTAAG ACAAACACAC 001680 001681 AGAAGGGCAA ACATCCAGAT ATAAACATCC TACTACATTG ATATGAATAC TCACATATGT AAGATCAATG ATATCACTAG 001760 001761 CAAAACAAGC TCCAAGTCAA TGGGCTTTTC CTTTCGACAT ACACCTCTAC ACATAACCAA AAATGCTTCA ACTACTTTTC 001840 001841 TTTTCTCCAG AGGCAGTTGG TTTGGCTAAG TAAAAATGGG GTTCTTAGGA GACTAAGGCG GAAAAGAGAC AATAGTGCCT 001920 001921 TTTCCCCCTC CAGAACTTAT CTAAGAATGG AAGGCAGGTG TTTCTATGCT ATACATAGCA TGAATTTTAC AGTCATGGAT 002000 002001 ACTGATATAA TGCTTCCAAA TAGAATTAAT TCTCTTCCCT CCCTTATTCC CACCCACAGC CAGCAGATGC TGAAAGACTG 002080 002081 CACTGCCCAA ACACTGCCAT CTTTGCTTTA TATATCCAAA AGAGTGGGAA GTGCTGTCAC ATCTCCATCA GAAACTGTCA 002160 002161 AACACTAGTA ATGGTAGAAA ATATTTGAAT GACACAATTA ATAGGCTTGA TTTTGTGGAT GCTCTACTTT AGAAAGAAAA 002240 002241 TTCATATGCT TTTCAAACAC ACATGCAATA TTAGAAAAAT TAAGTGTGAA CTAGGCCACA AAGCAATTTT CAACAAATAC 002320 002321 TAATGAACTG ATACCATGTT TAACACAAAT TCTAACCAAA GTGCTATAAT ATTAGAAATC AATAGCAAAA AACTACCCTC 002400 002401 CAAAAAACAT CTAAGTAATT CATGAATAAA ATAATGTATA ATGGAAATTT ATGAGTTTTT AAACTTAAAT GGTAATGGTA 002480 002481 GTATTATATA TCAAAACTCA CGAGATGCAG CTTTTAGCAG ACATTACTAA TTTCCTACTC AACAATCATT CCCCTACCTT 002560 002561 CATGACTTTG GTGTCAGCCA TATGATTAGG GCTCGGGTCC ACCAACCAGC TGCATTTTCT TGGTCTTAGC ATATACTGAT 002640 002641 TAAATTGAAA TGACTAAGAG TCAGTGAGCT GCAATTGAAT TCCCCATGGC TGACTGTGGC AAAACATTTT AAAATAGGGC 002720 002721 ATAGACGGCA CCAACCAAAA ATGTTGGTGT ATTGTACTGT AGTAAAATTA ACAAGTCTTG TTCATTGAAA ACAAACAAAA 002800 002801 CTTTAATATT ATAGTGAAAA GAAAAGCCAC AGAGTGGGAG AAGATATTTA AGACACTTGA AAAAGGACTT ATATCCAGAA 002880 002881 TATATAAATA ACTCCTGTAA GTCAGTAAGA AAAAGACAGA CAATAGAAAA ATTATCAAAA AGACCTTACA AAAAAGGATA 002960 002961 CCCAAATAGG TAATAAACGT GAAAAATGGT CAATATCATA GTCATTAGGG AAATGCTTAA TTTGCATTTG TATATCCAAA 003040 003041 AGAGTGGGAA ATTGTAACAT ACCTCCATCA GATACTGTCA AACATTAGTA ATGGTAGAAA ATATTTGAAA CATGTAAACA 003120 003121 AAAATATCCA CAGCATTACT ATTTGTAAGT GGTCAAAACC AGAAGCAACC CGAGCCCCTC AGCAGAATGG GAAAATATGA 003200 003201 AATATACAGT AATAAGAACA AATGAACTTC AATTTACAAC ATGTATACAG TTCACAATCA TAATGTTGAG AAAAATAAAC 003280 003281 CAGACACAAA AGAGTACATC CTGTCCCATA CCGTAGCCCT TTATATGAAG TTCAAAAATA GGCAAAAAAC CTATGGTGCT 003360 003361 GGAAGTCAGT GTCAGGGGTG GACTAGAAAT GGGCAAGAAG GAGTTTCTGA GGTGCTGGAA ATGTCTAAAA TAGATCTGGA 003440 003441 TGCTGTTTAC TTTGAAAAAA TTTACTGTGG CATACATTTA TGGCTTGTTG TACATAAGTT ATATTTCAAT GAAAATTCAC 003520 003521 ATTAAAATGT AATATAAAAA AGA |
Predicted Small Protein
Name | ENST00000428289.1_smProtein_1946:2167 |
Length | 74 |
Molecular weight | 8154.4031 |
Aromaticity | 0.0547945205479 |
Instability index | 49.5631506849 |
Isoelectric point | 7.84637451172 |
Runs | 14 |
Runs residual | 0.0476358815731 |
Runs probability | 0.0361495949732 |
Amino acid sequence | MEGRCFYAIHSMNFTVMDTDIMLPNRINSLPSLIPTHSQQMLKDCTAQTLPSLLYISKRV GSAVTSPSETVKH |
Secondary structure | LLLEEEEEEELLLEEEELLLLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLHHHEEELLL LLEELLLLLLEEL |
PRMN | - |
PiMo | - |