ENST00000428584.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000428584.1

Source

Gencode19

Same with

lnc-HSCB-1:18,NONHSAT084637

Classification

intergenic

Length

5859 nt

Genomic location

chr22+:28388457..28404569

Exon number

5

Exons

28388457..28389523,28390461..28390641,28393399..28393727,28395418..28397646,28402517..28404569

Genome context

Sequence
000001 ATCACAAAGG CGGTGAGACT GCATTCACTT ACAGGTTCCT ATTTAGGGCC AAGTTGCTCT GCCTTTCCAA ATCAGCATGG 000080
000081 GCCTCAGGCC CTGGCTCAGC CCTCCAGGCT CGACTTACCC GGCTGATGAG CTGCTCGCCC GTCTCGGAGG CAGTGATGAG 000160
000161 TTTGCAAAGG GCTTGGAGGG CAGGATTGGG CAGACCTAAA CCAAGAAAAA AGGGTAGAAG TTATTCAGAA GGGCCTCTGC 000240
000241 ACCCAAAAGC CTGCCACCTT CCCAGGGGAA AGAACCCTAA ATCCTTGGCA TCGGTGGCAT TTTTCAGAAG CTCAGCACAG 000320
000321 CTAGACATGT GTGTCTGTGT GTGCCTTGGA AAAGGACAGC GTGGTCTCCC AGGAAGGTGG GTGGAAGTGG GTTGAGTCCT 000400
000401 GACCCTGCCG CAGTCCTCTA GGCGTGGCCA CACTCCCAGG ACCCAGGCAG CACCACCCCT AGTCAAGCAC CCAGCTTCAC 000480
000481 CCTGGGGTTG GCCGCACAGC TTCATCGGGG CCACAGCTGC TGATGACAAT GGCAGTAGTG GCCAGTGTCT GCCGGCACGA 000560
000561 CCTCCCATCA TCCCGGGAAG GGGCAGCGCC AGTGGGGCGC AGATGCCTGC CATCACAGAT GGAAACAGCA GGTAAATGGC 000640
000641 ACTTGTTTCC TCCAGGTGTG GAGATGCTTG TATCTGGGAC CCCCTGCCAT TTCTCAGGAC ACCCTCCTGC TCCTAGCTGG 000720
000721 GAGATCCAGC ATCCTCATGA ATGCGGGGCC CAAGGCCACC AACTGTTCCA CCTGCTGTCA GCCAGGCCTG TTGCCCCAGC 000800
000801 CCTACACCCA CAGCTCACCC AGCAGGGACT GGAGTGTGCT GCTGCACTGC TGGAGCCGGT CGCCCGGGTC GGAGGTTGGG 000880
000881 AAGAAGACAG CCGCTGGCAG GCCACTGGTT GGGGGGTCCA GCCGGAAGCC CACAGCGGTG AGGAGGGCCT GCCAGCCAGG 000960
000961 GATGCCGCCC ACTTTGTTCT CCACACTCTG CTGGGATGTG TACATGGCAT TGCGCTGCCC ATTCTGGATG CGCTGCAGGG 001040
001041 ATTTCTCCAC CTGAGGGGGA ATTGGGGTAA ACACTGGGAT GCCGGAGCTC AGGCATCCCA GACAGGAGGA AGTGTGTACT 001120
001121 CACACCAGCC AGGAGGAAAC AAGCCTGCCT GGGAGGACAG ACGATCAGCC CTGGCTGTCC CTCAGGAGCG GGGGGCCTCC 001200
001201 AAGGCACACT GCCCACTGGG TCAAGGAGTA TCCAGGAGGA GTTAGAAGCA TGACCCATCT GCCTGGCACC AGCACCTGGG 001280
001281 GCTGCCAGGC AGCCACCCCT GCAGCTGTGT TGACAGGACC TGGCAGAGGG ACTGACCCAC CTTTGGAAAA TGACACCAGC 001360
001361 AATATCAGGA TGTGTCAACT GGATTTATGC TAAGAAAATA GGATTTTTGG TGTTCCTCTG TTTCCCAAAG TTTGAGACAC 001440
001441 TTTCAGACAC TCTGCTTTGC GGTTGTGGCC GATGTTACCC ATGGGTGGGA CTTTTGCTTT GCTCTAGATT TTTGTAACAC 001520
001521 CCTGGGGAGT TTCAGGGGCC AATGCTGAGA GAAGACCACA GGCTGACACA TCATGAGGTG CCTAACTTAC TGAGAATCAT 001600
001601 GCCTGCTGTG ATGAGCCCTT GGAAACCATC AGGACTGGAT GGTAGGGGTC CTGAGAGGAT TGGGGGAGGA GGCCTTGATA 001680
001681 TGACAGAGTG GACAGAGGCC GTGGAACCCA GGACAGCCAG CCTGCTCCAC AATCCTCATC CCCACAGACC TTCATGTGTG 001760
001761 GCTCCTAAAT AAGAGGAAAC CCACTCCTGA TAAGTCAGGG GCTTTGAAAA GTGATTTTGT TTAAATGGTG CAAACAAGCA 001840
001841 AGCCAATCTT GGGGAGACAG GGCTAAACTT AAGTCCTTTA AGAAGCTCTA CATACTGACA AGATTCTAGT TCCCTTCCAC 001920
001921 CTTATATGCT GCAAAGTAAA AAGTATCACT GAATGAGAAA ATCAGCATAA AGAAGCCCAA TAATGTCTGC CTGAGTTTCC 002000
002001 CCTATGATGA CTTTTGGTAC TTTTTGGGAA ACATTAAGTA TGAAGTTATT TCAAAATAAT TTTTTGGTGC CTCTGCTTGG 002080
002081 TGATGCCTTA AACTCTGGGT AAGAGAAACA CCAGGTGCCT GTCAGGAGAT GGCCTTTTCC AGGTTTCTGG TTAAGCTACA 002160
002161 AACAGCTAAC TGGCTGCTGT CATCAAAATA AAAGCTTTCT GAAGGTGGAG GCATCTGATA CCCAGAGTGC TGCTATCAGC 002240
002241 CGGCACGGTG GGCCGCTGGG TGGCAGGAGC GTCGAGAAGG CCAGCTCGCT TCCTATCTGG GATTCAGAAT CAGCTATGGA 002320
002321 AACTTGAGAG ACCTAGAGAA AATAACTTCT TTCACTTTGA ACTGATTCTT TGCTTCATAA GAAAAGTATT ATCCAGCCAC 002400
002401 AAAAATGGTC AAAATTCAGA TCTACAAAAG CCTGTCAGGC AGAAACTGAC CCCACTTAGG CCACGCCAAT GAGCAAGTCA 002480
002481 TCAAAGCAGC CAAGACAGGT CCTGTGGGGG CCACCCATGC ACAGGGCCCA GCCTCGGGTC CTAACCCCGC CTATGCTTTC 002560
002561 CGCCACCATA AAGAGGCCCA TCTGGGTAAG ACCTGTCCCG CCTGCTGTGG GGTATTAGGG CAGATGGGGT CTGAGGGGTC 002640
002641 TGAGGGCTCT GAGAGCAGCT GGCAGCTCAA GGACATCCGG AGTTGGAGGA TGGAGCAATG CAGGCCCTTG TGGTAAAGAC 002720
002721 AGTCCTGCAG CCGCGCAGGC AGGGATGCTG CAAGTGGAGT GCCAGGCGGG TGCGGAGCCC TGTGGGACTG TGGAGGGGTC 002800
002801 AGAGGGAAGC CAGGATTTTG GGGTCTCTGA GAGTTTGGAG AAGGGGAAGA AGATTAAAGC TTGTTTCAAA AGTTTCTAAT 002880
002881 CAGGTGGGCA GGGCCAAGGG TGGCTGTGGG GTGAGACCCA TGACTCAGGG TGGCCCACTG TTACTCTATT GATTTTTGGG 002960
002961 CGTTTTTTTC CAAATTGATT ATTCTTGCTG AATGAGACCT GAGTCCTTGA CTGTCCCCTT AAAGCCACCT GACTTGTTTT 003040
003041 CAGTTCCACT GGCCTGTCGG GCTGTTTTCT ACTCAACTCC ACTCTTGCTT GTCTGCCCTC CCTGCCTGGG GCCCAGCCAG 003120
003121 CAGTCAGCTC AAGGGCCAGA TGAATTGGGT GGCTGTGCTC TGCCCACTGG GCATCGTGTG GATGGTGGGT GACCAGCCCC 003200
003201 CTCAGGTGCT CAGCCAGGCC TCAAGCCTTG CTGTGTACCT CAGAGCAGCT CCGTACCCTG ATGTCACAGC AAAGAAACTT 003280
003281 AGACATGACA CAAACTGTGG CTTCCCAAGG CAGCAAAGAA TGGCCAGGGG TCATGAGGGC CGTGCCCCAC TTTTGGACAG 003360
003361 ACCTACTCTA AAGTCACGCT ACCTGCGTGC AAATCATAAA ATCAACACTT TTGAGGAGAT CACAGCTATG CCTTCGTAAC 003440
003441 ACAGCCCAGT CCGACCAGAT AGACGGTGCC TCGTGACCCG AAAACAAGCC CCCGGCCCCC CACCATGTGT GTGAGCCTTA 003520
003521 CCTTGGACTG CACGCTGAGG GAGCGGATGG AAGGGACAGC AAGGAGGCCG AAGCGCTCGT AGAGGTACTC ATTGGAGGAG 003600
003601 CTTCCCTTCA GGAGGGCGAA AGGAATGAGG TAGAGCTCCC CCTCCAGAAC CAGGATGAGC TGCCGGTGCC GGCCCACGGG 003680
003681 GCCGCTGGAG TGCATCAGGC CCTATGGAGC AAGCACGGAG AGGCTGACAT GGGTGGCCCA GCAGGCAGGG GTTTCAGGCA 003760
003761 CCAGGACAAC CCTGAGCCCT AGCCTGGATG ACACAAGCAC GAGCAGAGAC AAATGGCTTC TCTGGAACAT CCAGCTCCGA 003840
003841 ATTTTAACCC AGAGACTATG AGAGACAGAG GTCGTCACAT CCCCCTCACC TCATCTTCAC GTCACCATCG CTATCCTCCA 003920
003921 CACCTACTTA CTGAGCCACC ACCAAGCAGT TACCCTGAAG TCCAGTTTCC AAGCCCAGAG TTCTCCCAGG CAACCCCCAA 004000
004001 TGGATCCCGA ATGTGTCTTT GGGTGGTGAA TTCTGATTGG ATTGCCGTTT CGGTCAGCGG GACCTTCTGC ATATGCCCTG 004080
004081 GTTGAGTACA GGTCGAGCTC TTCAGAAAGC ACTCATAGCA AATGTTATGT TGATCATGTC CTAATCTGGA GTTTAAGAAA 004160
004161 GATGCGCTCC TTGCGTATCG CCAAGGTTAG AGGATCTGCA GGTGACCTCC GCGGGGCACC GGGGAGTTTC CTTTTTACTG 004240
004241 GCAGACACGG CAGGCCTCTC AGGGATTCAC AGTATCACAG GCCAGAGGAA TGAAAATCTC TGATCACCAT GGGGGAGGGA 004320
004321 AAGAAAATGC CTGGGTCCAT GAGCTTTCAG ACTGATTAGA CTTGGGATGA AATGGACTTT ACTGTCTACA ATAAGGATTC 004400
004401 CAGAGGCAAA GGGCTTCAGG GTATCCAGAT ACCCCAGAAC TGTGTATAGG GCTTCACATT TTTTCCTGAC TGATATTTTT 004480
004481 GATGGAATAA ATTTATCAAA CAGAACTGTT TAAGGTAGAG GAACCCTTTC TGTGATGCTG CTGGGAAATC CTGTCATGAT 004560
004561 GGGTGGATAC ATACAGTTTT GGCAAAGATC ACACACCTCC TGGAAATCAC CCTCAACCAT AACTGAAGCC CACCAAGACT 004640
004641 GTAGATACTG TATTTCAGCC AGAAATGGAA AAGCGAACAT TCAACCCATT CAACTGTATG CTTTGGCCAA ACAACCGCCC 004720
004721 ACTGGTTTGC CTGAAGTACC TAAGAAGGTA TTGGAGAAAC GTGACCAATG GCCAGCAAGA GCCAGAAGGG CCTGCCTGAA 004800
004801 ACCCAGGGTC CAACTTCAGC CAAATCAGCT TGAAGGGACT GTTCAAGCTG CAGGAGCCTC TGTGCAGTGG GCAGGGTTGG 004880
004881 AGGGGCGGAG GGGAGCCTCT CTCTCTATCT TGGCTGACCT GGTAAAAATG ATCCCTCCAC CCCTAGTGGC AGAAGACCCT 004960
004961 GACCTGCCTG GAACCTGCCA GGGTAAGGCT AAGATGTCTG CTTGTTGAAC ACCAGCTAGA ATAGAGCCAG CACGCAGATG 005040
005041 ACACTCATGT AACAGCAGCC ATCCAGGTGA GAATGCCACT TACCACGTGA GATCTTGCTG GTTATCCTGG GTGCTGCCAC 005120
005121 CACTGGTTTT AGTCATACAG ACAGTTTGCA AGTAATTGCC TCCATTTTTC CTCCTCCTAA TCAGTTGTGA AAATGCTTGT 005200
005201 TGTCCTTGGG TGATGTCTGT CCTCATTTGA ATATCACTAC AGATGTCTCA ATCAGAAATC AATTAGACAG CCTGGTGGTG 005280
005281 GGGCTGCCAG TCTCACAGGC CTCATCCTCT ACCTCATACT GGAATCTAGG TCTGATTGTT TCTAAGGACA AAAATTCCCT 005360
005361 GGCTATACCC AAGCCTCCCA ATCTATTTAG AAAACAGGCA GCCACGTGGT CAGTCTCATT CCTGTTGCAT CTGTTCTAGG 005440
005441 AGAGGCCGAC TTATCCTGCT ACCTGATTTT GCAAGGGGTA TTTTACAAAA CACAAGGGAG TCCTTTCCCC CAGGGCAGTG 005520
005521 ATTACAGTCA TGACCCAACC AAGGCCAAGC CACTCTCATG GCCGAGCCCT CGGCAGAGCT AGACCCCTGC TTTCACTCTT 005600
005601 AGATGAGAAG TCTTAGGTGA AATCCCTGAG CTCCAGTGCT TGGAAAGCAG TTCAACAGCC TAACAGACAT AAACAAGTTT 005680
005681 TGAATAAGTT TCTAGGATTT TAAACAGGTG ACTCCACACT TCATGAATCA CAAGCTGAGG TGAATGAGAT GTACTTTTCT 005760
005761 TTCTGATCAA AGTCATTTGC TCTTGCTACC TGTCCTAGAA CCTTGGTTTT TAAATTTAAA TACAGGAAAC AGGGAATTTA 005840
005841 AATAAAGGGA AATAAAAGT
[back to top]

Predicted Small Protein

Name ENST00000428584.1_smProtein_3812:4084
Length 91
Molecular weight 10043.2102
Aromaticity 0.0888888888889
Instability index 65.0433333333
Isoelectric point 6.48541259766
Runs 11
Runs residual 0.0176366843034
Runs probability 0.0480400186283
Amino acid sequence MASLEHPAPNFNPETMRDRGRHIPLTSSSRHHRYPPHLLTEPPPSSYPEVQFPSPEFSQA
TPNGSRMCLWVVNSDWIAVSVSGTFCICPG
Secondary structure LLLLLLLLLLLLHHHHLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLEEEEEEELLLEEEEEELLEEEEELL
PRMN -
PiMo -