ENST00000428903.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000428903.1

Source

Gencode19

Same with

lnc-LRRC16A-1:1,NONHSAT108131

Classification

intergenic

Length

577 nt

Genomic location

chr6+:25042067..25056892

Exon number

3

Exons

25042067..25042144,25055191..25055343,25056547..25056892

Genome context

Sequence
000001 CGGGACACTC ACGGTTGAGC TGGCGCCTCC GGATCCTGTC CCTCCATGGC CTGTTTCTGA TCCAGTGTAA TCGCGAAGGA 000080
000081 TGGAGGAGGA AGCAATTGAA GGGAGATAAA GAAAGGAACA ATAAGGGGTC TTTTCTCCTT GACATCTCTG CCAAGGCACC 000160
000161 TTGACTCATG AGAGTGTCCA GCCTACTTGA GGAAAATTGT CCAAGAAGTC TAAAGGTTTC TTCCTTATGA GCTGGCTTGA 000240
000241 GCAGGAAGTA TGGTAGATAC TCATTCATAC CACAGGGTGT TGCCATGGAA ATGGATCAAA GTAAGGTGAT ATCCGAAGAG 000320
000321 AACAGTAGCT GCCACTTAGA GCCTCAGAGA GGGGAGAAAG CCTTAATGGA GACTTCACAC TCTAAGGTGT GGTCCAGAGT 000400
000401 GTGCCTACGA CCCAAGGCAC CAAGACAAGA CCTATCACCA GGAACTACCT CGCGAACTAA GCAAAATCTC AACAGAACAA 000480
000481 TGTACACCCA CATCCGAAAG AAAATATGCT GGCGTGTAAA AAAGGAAGAA AAACTACCAA GAAAAATTAA ACATTTCAGT 000560
000561 TAACTGGCCA ACGTATT
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Predicted Small Protein

Name ENST00000428903.1_smProtein_284:562
Length 93
Molecular weight 10892.5331
Aromaticity 0.0434782608696
Instability index 61.1217391304
Isoelectric point 10.0834350586
Runs 15
Runs residual 0.0278385986863
Runs probability 0.0287463934523
Amino acid sequence MEMDQSKVISEENSSCHLEPQRGEKALMETSHSKVWSRVCLRPKAPRQDLSPGTTSRTKQ
NLNRTMYTHIRKKICWRVKKEEKLPRKIKHFS
Secondary structure LLLLLLEEELLLLLLLLLLLLLLHHHEEELLLLLEEEEEEELLLLLLLLLLLLLLLLLHH
HHHHHHHHHHHHHHLLEEHHHHLLLHHHLLLL
PRMN -
PiMo -