ENST00000430006.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000430006.1

Source

Gencode19

Same with

lnc-KRTAP9-7-1:1,NONHSAT053626

Classification

intergenic

Length

2160 nt

Genomic location

chr17+:39558668..39568840

Exon number

3

Exons

39558668..39558760,39564673..39566569,39568671..39568840

Genome context

Sequence
000001 GGTTCTTGTT GCTTTGGAGA CCACAGGAGA GGCGGTGGTG ATGGCCCATC GCTTCAGCCC TGTGGCATCC CCACAGGATC 000080
000081 CATGGGCATC AAGTAATTTC CCTGTGCTCC TCTGAAGATA AACCGCTGCC TGCACCAGCC TAGCAGCTTC CAGAAGCTGT 000160
000161 GGATGAGAAG CAATCTCCCA CCAAAAGCCA GAGCTCACCT GCAAAGCTTC AATCCCAAGC AGAAGGAAGC CTCCGTTTTT 000240
000241 TCCCCCCAGA TGAGCCTGAA TTCACCTCCA GAAAGTCTCA ATGCATCACA CCAAGGGTCA CACACCTGCT CATGGTTCTT 000320
000321 CTTGAGGCAA AGCAGCTCCT CCTTCAGGGA CTCCAGCTGG GCCTCCAGGT CACACTTGGC GAGGGTGAGG TTGTCTAGCA 000400
000401 CCCTGCGCAG GCCACAGATG TCAGCCTCCA CCAGCTGTTG CAGCGAGCGC TCTCTCTCGT ACCTGTAACA GGGAAAGTGC 000480
000481 AGGAGTGACA GTTAGAGGGC AGGAAGGGGC ACCAGGACAT GACTCCCAGC TCGCAGCTGT AAGTCCACTG GCCTGCCCTT 000560
000561 TGCCATCTAA TTGTGAGTTG GCTTATCCTG TGTAGTGTGC TCAAAGCCCA GAAAGCAACA GGATGTTCCC CACTCAGTCA 000640
000641 ATACTAAGCA CCTGAGATGA ACCAAGGGGA GCAGCTGGTA CTGAGGATAC TGTGATGGAC ACACAGCCAG CACCTGCCTT 000720
000721 TACACACAAT GGCCCAAAAG GGAGGTGGCA AAGTAACCAG GCATTTGCAA CACAGTGCAA TCACTGCAGG CCCCTCTCTA 000800
000801 CAAGCCCCAT ACCCAAAGGG ACCCTGGATT CCCTATTAGA GTAAAAGCCA CATTGCCAGC ATGAGAGGAA GGAAATGGCT 000880
000881 TTCTTTAGCT CTAGAAGAGT GAGACTTGCA CAGTGCCCCG AAGAAAGATG ATAAAACACA ATGCCCTTCC AGCACCCAGG 000960
000961 GTAGACCCTC CTCAGGTGGT GTCAACCCTT TGACTTTCAC ATGTTTTCAT CTTAGGCTAT GGAGCATGAT TTCTGCTATG 001040
001041 AATTATCAGC ACTCACAAAT TAATCAAGCT GCAGCACAGA AACATATCCT TATTAAGGCA ACAGTTTCAC AGGAAATTGC 001120
001121 TTCAAGAAAG GAAAATTTGG TACAAAATTT AAGGCCAAGT CCCAGCTCTG CCACTCGGTA CCCACATGGC TTCTGGCAAG 001200
001201 TCACACCAGC ACCCCAAGCC TCAGGGTCCC CACCTGTGGA GGAGATTCTA TCCCTGCCCG CCTGCTTCAC AAGTTGCTTA 001280
001281 CCAGGTGGAT GATGCATTCT AGCACATGTT GTAAACTGTT AATGCTAAAC CACTGGAGAG CGGATAGTTT TTCAGGATCT 001360
001361 TGAGCTTAAT GCCCTTTGTT CTCTTCTGCT ATAACTACTG GGTTGGGGTC TGGGTCAATG ACATCCGATG CCACATGAGA 001440
001441 CAGAAGCAGC CAACTTGGCA TTGTCCCATC CCCATCCAAC CCCAACTCTC ACTTGGCTCC TTCCCATCCC TGTCCAACCC 001520
001521 CAACTCACTT GGTCCTGAAG TCATCTGCAG CCAATTTGGC ATTGTCTATT TGCACAACCA GCCTATTGTT CTCCGATTTG 001600
001601 GTGCACAGAA TCTGGGGTAA GAAAGTAGGC TCAGTAAGTG ACTTACTGAT CCCAGAGACA CCTATAGCCT CAGGTGAGAG 001680
001681 GAAGTTTTAT TGGCTGAAGT TGAACCTACA GCATCCGCCT GGACAACACA AACTCCCAAA CGTGCAAGAG ATGCTTTTGT 001760
001761 GGTGTGGGAA GGAAGATGTG CAAGAGACTT CTTGGAAAAG GATGAAGACA TAGAGTCAAA GGAACCAGGA GATGGAAGAC 001840
001841 AGTAGCAAAC TGAACATATA ACAAAGACTT GCTTTCATTT TGCCAGATAT GATGCTTAGC CCAATATAAA TAAGAAGATC 001920
001921 TGGCCGGACG CAGTGGCTCA TGCCTGTAAT CCCCGCACTT TGGGAGACCA AGGCAGATGG ATCACCTGAG ACAGCTGCAA 002000
002001 AGATTTCGAG GTGGAAGAGA GCTCACTGAG AGACCGGAAA AAGACTTCAT GGAGTAGGGG ATTTTCCAAA TATGTTTTGA 002080
002081 ATGATATTTT TTATAAAGGG TTGGGGAATG AGCTTCTCTC ATAGAGAACA AAATAAACAC AATCAAACAT TTGGAAAATG 002160
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Predicted Small Protein

Name ENST00000430006.1_smProtein_1025:1291
Length 89
Molecular weight 9485.691
Aromaticity 0.0568181818182
Instability index 82.5443181818
Isoelectric point 8.77044677734
Runs 11
Runs residual 0.00636363636364
Runs probability 0.0392397745339
Amino acid sequence MISAMNYQHSQINQAAAQKHILIKATVSQEIASRKENLVQNLRPSPSSATRYPHGFWQVT
PAPQASGSPPVEEILSLPACFTSCLPGG
Secondary structure LLLLLLLLHHHHHHHHHHHLHHHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLEEEL
LLLLLLLLLLHHHHLLLLLLLLLLLLLL
PRMN -
PiMo -