ENST00000430006.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000430006.1 |
Source |
Gencode19 |
Same with |
lnc-KRTAP9-7-1:1,NONHSAT053626 |
Classification |
intergenic |
Length |
2160 nt |
Genomic location |
chr17+:39558668..39568840 |
Exon number |
3 |
Exons |
39558668..39558760,39564673..39566569,39568671..39568840 |
Genome context |
|
Sequence |
000001 GGTTCTTGTT GCTTTGGAGA CCACAGGAGA GGCGGTGGTG ATGGCCCATC GCTTCAGCCC TGTGGCATCC CCACAGGATC 000080
000081 CATGGGCATC AAGTAATTTC CCTGTGCTCC TCTGAAGATA AACCGCTGCC TGCACCAGCC TAGCAGCTTC CAGAAGCTGT 000160 000161 GGATGAGAAG CAATCTCCCA CCAAAAGCCA GAGCTCACCT GCAAAGCTTC AATCCCAAGC AGAAGGAAGC CTCCGTTTTT 000240 000241 TCCCCCCAGA TGAGCCTGAA TTCACCTCCA GAAAGTCTCA ATGCATCACA CCAAGGGTCA CACACCTGCT CATGGTTCTT 000320 000321 CTTGAGGCAA AGCAGCTCCT CCTTCAGGGA CTCCAGCTGG GCCTCCAGGT CACACTTGGC GAGGGTGAGG TTGTCTAGCA 000400 000401 CCCTGCGCAG GCCACAGATG TCAGCCTCCA CCAGCTGTTG CAGCGAGCGC TCTCTCTCGT ACCTGTAACA GGGAAAGTGC 000480 000481 AGGAGTGACA GTTAGAGGGC AGGAAGGGGC ACCAGGACAT GACTCCCAGC TCGCAGCTGT AAGTCCACTG GCCTGCCCTT 000560 000561 TGCCATCTAA TTGTGAGTTG GCTTATCCTG TGTAGTGTGC TCAAAGCCCA GAAAGCAACA GGATGTTCCC CACTCAGTCA 000640 000641 ATACTAAGCA CCTGAGATGA ACCAAGGGGA GCAGCTGGTA CTGAGGATAC TGTGATGGAC ACACAGCCAG CACCTGCCTT 000720 000721 TACACACAAT GGCCCAAAAG GGAGGTGGCA AAGTAACCAG GCATTTGCAA CACAGTGCAA TCACTGCAGG CCCCTCTCTA 000800 000801 CAAGCCCCAT ACCCAAAGGG ACCCTGGATT CCCTATTAGA GTAAAAGCCA CATTGCCAGC ATGAGAGGAA GGAAATGGCT 000880 000881 TTCTTTAGCT CTAGAAGAGT GAGACTTGCA CAGTGCCCCG AAGAAAGATG ATAAAACACA ATGCCCTTCC AGCACCCAGG 000960 000961 GTAGACCCTC CTCAGGTGGT GTCAACCCTT TGACTTTCAC ATGTTTTCAT CTTAGGCTAT GGAGCATGAT TTCTGCTATG 001040 001041 AATTATCAGC ACTCACAAAT TAATCAAGCT GCAGCACAGA AACATATCCT TATTAAGGCA ACAGTTTCAC AGGAAATTGC 001120 001121 TTCAAGAAAG GAAAATTTGG TACAAAATTT AAGGCCAAGT CCCAGCTCTG CCACTCGGTA CCCACATGGC TTCTGGCAAG 001200 001201 TCACACCAGC ACCCCAAGCC TCAGGGTCCC CACCTGTGGA GGAGATTCTA TCCCTGCCCG CCTGCTTCAC AAGTTGCTTA 001280 001281 CCAGGTGGAT GATGCATTCT AGCACATGTT GTAAACTGTT AATGCTAAAC CACTGGAGAG CGGATAGTTT TTCAGGATCT 001360 001361 TGAGCTTAAT GCCCTTTGTT CTCTTCTGCT ATAACTACTG GGTTGGGGTC TGGGTCAATG ACATCCGATG CCACATGAGA 001440 001441 CAGAAGCAGC CAACTTGGCA TTGTCCCATC CCCATCCAAC CCCAACTCTC ACTTGGCTCC TTCCCATCCC TGTCCAACCC 001520 001521 CAACTCACTT GGTCCTGAAG TCATCTGCAG CCAATTTGGC ATTGTCTATT TGCACAACCA GCCTATTGTT CTCCGATTTG 001600 001601 GTGCACAGAA TCTGGGGTAA GAAAGTAGGC TCAGTAAGTG ACTTACTGAT CCCAGAGACA CCTATAGCCT CAGGTGAGAG 001680 001681 GAAGTTTTAT TGGCTGAAGT TGAACCTACA GCATCCGCCT GGACAACACA AACTCCCAAA CGTGCAAGAG ATGCTTTTGT 001760 001761 GGTGTGGGAA GGAAGATGTG CAAGAGACTT CTTGGAAAAG GATGAAGACA TAGAGTCAAA GGAACCAGGA GATGGAAGAC 001840 001841 AGTAGCAAAC TGAACATATA ACAAAGACTT GCTTTCATTT TGCCAGATAT GATGCTTAGC CCAATATAAA TAAGAAGATC 001920 001921 TGGCCGGACG CAGTGGCTCA TGCCTGTAAT CCCCGCACTT TGGGAGACCA AGGCAGATGG ATCACCTGAG ACAGCTGCAA 002000 002001 AGATTTCGAG GTGGAAGAGA GCTCACTGAG AGACCGGAAA AAGACTTCAT GGAGTAGGGG ATTTTCCAAA TATGTTTTGA 002080 002081 ATGATATTTT TTATAAAGGG TTGGGGAATG AGCTTCTCTC ATAGAGAACA AAATAAACAC AATCAAACAT TTGGAAAATG 002160 |
Predicted Small Protein
Name | ENST00000430006.1_smProtein_1025:1291 |
Length | 89 |
Molecular weight | 9485.691 |
Aromaticity | 0.0568181818182 |
Instability index | 82.5443181818 |
Isoelectric point | 8.77044677734 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.0392397745339 |
Amino acid sequence | MISAMNYQHSQINQAAAQKHILIKATVSQEIASRKENLVQNLRPSPSSATRYPHGFWQVT PAPQASGSPPVEEILSLPACFTSCLPGG |
Secondary structure | LLLLLLLLHHHHHHHHHHHLHHHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLEEEL LLLLLLLLLLHHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |