ENST00000431060.3

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000431060.3

Source

Gencode19

Same with

lnc-ALDH1A3-1:5

Classification

intergenic

Length

3907 nt

Genomic location

chr15+:101390036..101404501

Exon number

5

Exons

101390036..101390115,101390416..101390537,101395436..101395553,101400005..101400240,101401151..101404501

Genome context

Sequence
000001 GATTCTGTCG CGAACCCTCT CACGGCAGCT ATGAGACTGC TGCGCTCCCC AGACGAGGAA ACCTGGTCTC CCGGAGCCAG 000080
000081 GTGGAGTCTC GCTCTGTCGC CCAGGCTGGA GTGCGGTGGC GCGATCTCGG CTCACTGCAA GCTCCGCCTC CCGGGTTCAC 000160
000161 GCCATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGACTAC AGAGTCTTGC TCTGTCGCCC AGGCTGGAGT GCAGTGGCGC 000240
000241 GATCTCGGCT CACTACAACC TCTGCCTCCC AGGTTCAAGT GATTCTCCTG CCTCAGCCTC CTGAGTAGCT GGGATTACAG 000320
000321 CTCTGGGACA AACCAGCTTC TATGTCATGA GCACACTCAG GCAGCTCATT GGAGAGATCT GCATGGTAAA GCAATGAGGC 000400
000401 CTCCTGCCAG CAGCCATGTG AGTGGCATCT TGGAGCCAGA CCCTCCAGCC CCAGTCAAGC CTTCGGATGC CTGCAGCCCT 000480
000481 GGCTGACATT TTAACCACAA CTTCATGAGA GATTCTGAGC CAGAATCACC CAGCTAAGCT GCTCCCGGGT TGCCAGATCA 000560
000561 ATCCACAGTT CTCCAGGGAC CCATTGTGGT TTTGTGCTTC CTCTGTGCCT GTTCTGCTCC TCTCCATGCA CCCCAGCCCC 000640
000641 TCCCAGTCCC CTCAACGGTC CTTCTGGCCA GGCCCATAGC CCCCTCTCTG CCCCACAGTC CTCAGGCTCC AGCTTTCTCG 000720
000721 TTAGGAAGTG TTAGAAAGTT GCTGGAGTGA GAAATGAGCC TGTGAAACTC GTTGTCCTAA TTAAACTTCC ACAAGGAGAG 000800
000801 TGACAAGAGG CGACGGGGAG GAAACGGTGC CACCACCAAG GTCTCAGCCT GGGCCCAGGT CGAGGAAGGC CTTTGTCCTG 000880
000881 CAGAACAAAA GCCACTGTTT GCACGTGTTA AACTTCATCA AACTTCAACA GACCCAGGTG CAAAACCCCA CATCCCAAAT 000960
000961 GCCATCCGGG CTTATGCCAC CTTCCCGAGC ATGGACCGTC CCTAGCCGTC AACCCTAATC AGGGCCATGC CCTACATCAA 001040
001041 AGCTGCACTC CCTCCACAGA CAGCTTCTGC TCTGAGATGC ATTGTTCCTA TGACTTCCTA CACTCCGCCC TTGTCTGACG 001120
001121 AATTAGGGCA CGGAGCCCCC CCATGGCACA GCTGGGCCCT GCTGGCATTG TTAATGAGGT AGGAAGGGCG CGTTTGTCTG 001200
001201 AGCCTGGGAC TAACATAATC ACATAAAGTT GTTGCTTTGG AATAGATGGA GCTGCCCCAG AGTCGATTTT CTTGGAAGCA 001280
001281 ACGCAAAGCA CAGCTTCCTG GGAGAAGACA CAATGCCTCC TATTGTCTCT GCCACTTCCC CTCCAGCCTC CCAGCATTTC 001360
001361 TGCGTCTCCT CGGGAGCCAC TGCCCTGTGC AAGAGCTGTT TGCTGATGCC CAGCCGCGGC TTCCAAAACT CCCGCGAGAA 001440
001441 GTCGTTTCTG TCCACAGTCA TTGTTTCCAG ACCAGCCGAG CCAACTGGGG AGGAGAGGCC AAGCCCAGGG AGAGCAGTAA 001520
001521 GAGGCCCAGC TTGCAACACA GGCCCCCGGC GGCTGGAGTC GGCTCATGGG TTGCTGGGGG GCAGCTGGTG CCAGCCCTGC 001600
001601 TAGACATGTC CAGGGTCGGG GCAGAGGCCA GGGTGGCTCT CATCCACAAC GAGGCTCCAG GAAGAGGCTC CAGAGGGCCC 001680
001681 AGGTCCCTGG AGGAAGACAG AGGGTGGATT ATCCAGTGAG TCCTCAGATT GCTCCAGGGA GACTCTACCC CTAGGCCCTC 001760
001761 ATCCTACCTA GGACTGAGGC AGCCATCTGG GTCTCTGCTT CCCTAACCAC TTCCTCCTCC ACCCGACCAT CACCTAGTCT 001840
001841 CAAGGACTTG GGCAGCTTCT GGAAGTGGCT GAGACTGGAA GAATGTTGTC ACACCTACCA GATATCCCTA CGTGTATCTC 001920
001921 TACCACCCCC ACTACATATT CTGAAGAACC AAGGTGAGCT GGGGGAATCC CCAGGCCAGC AGGGCAAGGC CTGGGCAGGA 002000
002001 ATGGAGTGAG GAAGTGAGAA GTGGGGATCT TGGGGGTGGG CGGGCTGTGG GGCTGGGCTG TGCTGCACAC TGGGCAGGAG 002080
002081 GCAGGAGATG GCAATGGAAG CGACAGCTCC CCATCTTCCC CGGCTGCATA CGTGAGGGAT TCTGCTGCAT TCACTGAGTC 002160
002161 ACCAAAGGAC ACTGGAAGGC CATCAGGATT TTTGGGTGAC CAAGACATGG CTCCCCTCTT ACTGCCTGTG GGGAGACAGG 002240
002241 CATGTGAACA CCCAAGTCTA ACCCAAGCTG AGTTGACTGA GGGCCATTTA AAGATTCCAC AGAGGCTGAG AGCAGTGGCT 002320
002321 CATGCCTGTA ATCCCAGCAC TTTGGGAGGC CAAGGCAGGT GGATCACTTG AGGTCAGGAG CTCGAGACCA GCCTGGCCAA 002400
002401 CATGGTGAAA CCCCGTCTCT ACTAAAAATA CAAAAATTAG CCAGGCATGG TGGTGCACAC CAGTAGTCCC AGCTACTCAG 002480
002481 GAGGCTGAGG CAGGAGAATC GCTGGAACCC AGGAGGCAAA GGTTGCAGTG AGCCACGATC ACACCACAGT ACTCCAGCCT 002560
002561 AGGTGACAGA GCGAGACTCC GTCTCGAAAA TAAACAAATA AAGAAAGGTT CCAAGGATGG TCTGGAGGAC AAACAAAGGA 002640
002641 GGAGATTTGG TGCAGGAGTT AGGACAAAGA CTCCTGGGAC AGCAGCCCTC ACTTGGGGCC ATAGTGAATG AATGGGGGCC 002720
002721 TTTTGCAGAA GGGAAATGGA GGACATGTGT GGTGAAGGCT TTGCTGAAGC ATCTCTTATA AAAGGGGCAA AAGCACTTGC 002800
002801 TCTCCTCCCA GCTCTGGCTC AGCCTCTCTC TCTTCAAGTC CCTGGCATCC CTGGAAAACC ATGATTTTTC CATTCTGCAG 002880
002881 CCAGCCCAGG CACCTCCTCC CACCCCCGCA CACTGCAGTC TGGTGTGTGT GGTGGGCACA CATAGAACAC TTGCTGGTCT 002960
002961 TGAAAATGAA GCCATCTTTT GGGGCCCCTA GAAATCAAAG AGACCCACTT AGCCAAGATA TCACTCTTGG ACACCAGCAA 003040
003041 GGGTGAGATC ACTTGATAGG TATTTTGCCG TGTGTTTCTT TTTAACTATA TAAAAAACAA AAGGGTGGAT GTGCAAACCC 003120
003121 AACCCAAGAA TACCTTGGCT CAGGCTCAAC TAGATGAAAC TTTTAAAAAT GATTTAATGT TATGTTAGAC TGTTGCATAT 003200
003201 TAAAGCGATG TAATGCCTTC TAAGAAACGA GAGTCAGATC CTGAAAGCGA TGACTTGGGT AAATGTAAGG AGTTATAACT 003280
003281 CACTTTTCAA GAGAGCAACT ATAAACATTT TGCCCAATAT GTACAGACCT CTAATGACAG TGTGCAAAGA CTCTTTCGTT 003360
003361 CCCAGATTAT GAGGCTGCCA CTTTCTCCTC CCCTTCCTGA GCCGCACTTT TCTAAACAGC AACTGTCGGG GCAGGGGGAT 003440
003441 GGGAAGCTCA TGAGAGAAGG AAATATTTGG GACCGTGTCG GCCAGTGGAA TGGGGCTTGT GGTCACCGTG TTACAGAGTC 003520
003521 AAATCACTTC CCAGTAAACA CCAGTTTCCG ATGGCTCTCT GGCCAGGGTT GGCCGGGGAC AAGCAGGGAG TATATGTGTC 003600
003601 GGGTACGTTG CGTCACAAGC TGTGCAGCTG TGTAGGCCTC TCTGTCCAGA GGCATTAATG GAAAATGATT GGGCACCCAG 003680
003681 CCCACAGCAG ATGCGCTGAG GAATCCAGCC AGGGGGAGCT GGGATGCAGT GGGAGAGGGG ACACGCAGGG CCTGGCTGAG 003760
003761 AAGCCTCGCG AGGTAACCAC AGGCGGAAAT CTGAAAAATG AAGACGTTCC CACCAGTTCC AGAAAACAGG GCTAACTTAA 003840
003841 AATGCAGCCC CTTTCCTTGA AGTGGGCTTG GCAGGCCCCA GGTGTTGAAA GGCAAAAGAA AAAAAAG
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Predicted Small Protein

Name ENST00000431060.3_smProtein_3368:3634
Length 89
Molecular weight 9886.1207
Aromaticity 0.0909090909091
Instability index 54.6522727273
Isoelectric point 9.24346923828
Runs 11
Runs residual 0.00636363636364
Runs probability 0.0497824027236
Amino acid sequence MRLPLSPPLPEPHFSKQQLSGQGDGKLMREGNIWDRVGQWNGACGHRVTESNHFPVNTSF
RWLSGQGWPGTSREYMCRVRCVTSCAAV
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLHHHLLLLLLLLLLEEELLLLLLLLLEE
EEELLLLLLLLLLEEEEEEEEEEEEEEL
PRMN -
PiMo -