ENST00000431090.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000431090.1 |
Source |
Gencode19 |
Same with |
lnc-MRPL40-1:1,NONHSAT083405 |
Classification |
antisense |
Length |
2097 nt |
Genomic location |
chr22+:19435416..19437628 |
Exon number |
2 |
Exons |
19435416..19435848,19435965..19437628 |
Genome context |
|
Sequence |
000001 CCGGGGTCGC AGGGTAAATC CGGGGCGAGA CCTGGCGCGA AGCCTACGCG ACCACCGCGA CGACAGCGCC ATTCACCCCG 000080
000081 GGCCAGGCGG GCATCCTGGG CCGCGCAGCT ACCTTACGTC AGCCGCCTCT CAAATCACAC GGCTCTGGCC AGTTCTTTTC 000160 000161 AGCAGCTTTA TGAGATTTTC TCAAATCTCA ACAATCCGGT ATATTTTCAA AAGTACATAC TGAGCATCAA GGTGGTGCAG 000240 000241 CGAACCTCCC AGATCTGCAG CTCCAGCAGT CTTGCTTGAG CGTCCACTCA GGATGGAGGT GAACTCGCAA AGTAACTGAG 000320 000321 ATTGGTTGGG CATGACATAT GGTGGATCTA GGGTTGAATG ACCTCCCCAG GGAACGCAGG CTTGAAGTGG AGGCTGAGAA 000400 000401 TGCAATCCGA GTACAGCCAT AGGCCGGTCA AAGGGTCTTG CTGTGTCACC CAGGCTTAGT GCAGTGGCGT GGCGTGTTCA 000480 000481 TGGCTTACTG CAACCTCAAA CTCCTGGACT CCGAACAGCT GGGACCAAAA GCATGCACAG CCTCACCAGG CTAATTTTTA 000560 000561 ATTTTTTTTT TTTTTTTTTG TAAAGATGGG GTCTTGCTAA GTTACCCAGG CTAGTTTGGC CTCAAGCGAC CCTCTCACTT 000640 000641 TGGCCTCCCA AAGTGCTAGG ATTATAGGCG GAGCGCCAGT GCCTGGCTGG GACGTTTATA AAAAGGAGCA ATGCACAAGA 000720 000721 GGCAACAAAG GCAAGTAAAG AGGAGGCTGG TGGGCTTGCA GAAACGCCCT GCAGTACCTA TGCTGCGGTT CTCCCACTTC 000800 000801 ACTGATAACA AATCCTCAGT ATCCACTGAT ACAAATCCTG GGACTGCTGG GCCAGTCCCA GGAATGACAC TGGGACAGAC 000880 000881 TCCCTGGAGG TGGATCAGAA AGCTGCAGTT TTACCAGGGG TCCTGCTGTT GAGGCAGCCG GCTCAAGGAC CAAGCCCAAA 000960 000961 TAAGACACTG AGAGGAAGGC TGCAGGCCAG GGTGCAGGAG TAATGACCAG GATCAGTGCT CCAACTGGCC CCACTGTGTC 001040 001041 ATTAAAAGGC TCTGCAATGG AATCCATCCT GGTCCAGGCA GGGGAGTGTG CCTCCAGCAA AGGACCAGGC GTTTCACTGC 001120 001121 ATACACAGCA GGTGTTGCTT AGTGAAGACA AAAACCCAGA GCCAGAGGTA CTGTAACATT CTTCATTATG CATAAAGTGA 001200 001201 CAGTCTGTTA GCTGATGTGA TCCTGCAAAT GAAGGCTGTC TACCCACCAA GGGTTTCTCC CTCTGCTAGT AAAACTGAGA 001280 001281 CTTTGTCAGT GGAGGCTCAG GTAAGTCCCC ACAGTGCTCA TGCCTTCCAA AACCACGCCC ATTTCCAGTG ATGATGGTTT 001360 001361 GTGCCACAGG CCAAGTACTG AACATCATGA CACTCATAGA CACTCTTCAC TGAAGACGTG GATAGACCCT GGGGCCACCA 001440 001441 TTCTCTCCTC TCTGGAGTGT TGGAGGGGCC CTGACCAGGG CAGGACCCCC ATGTCTGGAA GCAGGGTTAG CCCTGGCTCA 001520 001521 TGGGGGACCC TGCTGGGCTT AGCCATTGCC ACCTAGGGAT CAGGCAGCCT TGTTTCTTCC TACTTTCTCC AGGAGAAGCC 001600 001601 CCAGAGGGAC ACTTTTCTAA TGGTGAGATG GAACACGGAG CACCTGCCAA CAGGCCTTCA GTTATGGTCA GAGGCCCAAC 001680 001681 CACCAGTCTG TGTTAGTACC TAATCAAACA TTTAGATTTA GGCTTTAGTT ATTGCCTGTT TTTACTTGAA ATTCTTGGCT 001760 001761 TAGAATTATT CCCAATGGGG CCAGGCACAG TGGCTCATGG GAACAAATTT AAAATAATCA GATTAGCATG TCAAAAGATC 001840 001841 TCACGTTATA GAAAGTGAAG ATCTAAGACC AAATAAATAC TGATAAAAAA TACAGGCCAG CAGAAGCTTG GATGATTTAA 001920 001921 TAAATTAAAA TTGGGAGTTG GGGAGTAGGG AAGAAGGAGA GGAACATCTC TTTAGCATTT GTTCATTCTA ACATTCACAT 002000 002001 GTTTGCTTCT CCATGGAGTT GTTTCACTAT GAACAGGTTC ACTAAGGAGC CAGTTATGTC CATATGAAAT GAGAATAAAA 002080 002081 GTGCAAACTC ATTCAGA |
Predicted Small Protein
Name | ENST00000431090.1_smProtein_1319:1555 |
Length | 79 |
Molecular weight | 8378.2644 |
Aromaticity | 0.0384615384615 |
Instability index | 51.8756410256 |
Isoelectric point | 6.95367431641 |
Runs | 10 |
Runs residual | 0.00547217010632 |
Runs probability | 0.03112524289 |
Amino acid sequence | MPSKTTPISSDDGLCHRPSTEHHDTHRHSSLKTWIDPGATILSSLECWRGPDQGRTPMSG SRVSPGSWGTLLGLAIAT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLEEEEELLEELLLLLLLLLLLL LLLLLLLHHHHHHHEELL |
PRMN | - |
PiMo | - |