ENST00000433175.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000433175.2

Source

Gencode19

Same with

lnc-CLOCK-1:2,NONHSAT096443

Classification

antisense

Length

1617 nt

Genomic location

chr4-:56230138..56249563

Exon number

5

Exons

56230138..56231024,56231775..56231828,56232923..56233330,56241038..56241200,56249459..56249563

Genome context

Sequence
000001 GGTGCAATCC TGGCTCACTG CAACCTCTGC CTCCCAGGTT CAAGTGATTC TCCTGCCTCA GCTTCCCAAG TAGCTGGGAC 000080
000081 TACAGGCGTG TGCCACCACG ACCAGAGGCC AGGTGCAGTG CATGTAATCC CAGCACTTTG GGAGACTGAG ATGGGAAGAT 000160
000161 CGCTTGAGGC CAGGAGTGCA AGACCAGCCT GGGCAACACA GCAAGACCTT GATTCTACTA AAAAAAAAAA AGGATCCTTC 000240
000241 AACTTCAACA ATAATAACAC AAGGGAAGTG AAGAAAAACA CTTTCTAAGG AAATCTCTCT CTGAGCTACC ATCCTGCTAG 000320
000321 GGAGAGCCTG AAAGCAGAAT GCTGACTTGA CTAGCTCTGG TCAATGAAAG AAATCACCAG TGGAAAGGCT ACCAGGGGGC 000400
000401 TTTCTCAAAA GAGAGGGACA GTAAACTGCA AGATGAACAA CTCAATGCCA TCCAGGTCTG GATGAGAAAG AACAGTCGAG 000480
000481 AGACTGAGTT TCAGGAGTGG AAACACTCAA AGCATCATCT TCCACTTTCT TCTCCGGCTG CTAGGAAGAA GGGAAAAACA 000560
000561 CAGACCTTCT GAGGACCTGC GGAGCAAACC ACTGGCTTCA GAAAAGCAAA CAGGGACTTC CCTCTGCGCA GCAGGAAGCA 000640
000641 GTTAGCCTAG TCGGAGGCTT GACTGAAGAA ACAAATGAGG GAAGGCAGAA GTTGAGACGC AGCCAGTAGA GGAAACTCCG 000720
000721 GGAGAGGCAG GCAGCGTCAC TTGAAGAAAA GCTCTATTGT GATGGGAACA ATCACAGGAA CTAAGCGGCA ACAAAATGGC 000800
000801 TCCCCACCCC CTCTGCAAAT CCCAACTCCA TGCAAGCACT CTCCCTTCCC TCATTTTCTT TTCTTTTTTT TTGAGATGGA 000880
000881 GTCTCGCTCT GTTGCCCAGG CTGGAGTGCA GTAGCGCGAT CTCGGCTCAC TGCAACCTCC ACCTTCTGGT TTCAAGCAAT 000960
000961 TCTCCTGCCT CAGCCTCCCC AGTAGCTGGG ACTACAGGCG TGTGCCACCA CGCCTGGCTA ATTTTTTTTT TTAATTTTTA 001040
001041 GTAGAGACAG AGTTTCACCA TGTTGGCCAG GCTGGTCTCG AACTCCTGGC CTCAAGTGAT CCACCTGCCT CAGCCTCCCA 001120
001121 AAGTGGTGGG ATTACAGGTG TAAGCGACCA CGCCCGGCCT TTTAAAATCG ACTTGAGTCT CATCTCCTGA AATGCAAAAT 001200
001201 GCATTGGGCC TGTCTCTTAC TTCTGCATGT CTCATAATGC TTAGCACAGC ACAAGCCCCG AGAGCGCATC ATACACCCTG 001280
001281 GGGTGGGGAG CTCCTGGCAG GGCTGGATCC ACTCACCATT CCTGCCATCC ATTGGCACTT GGCTCAGCAC AGTTAGGCCA 001360
001361 ACAAGGACAT AATAGACAAG TCCAAAACAG TACTGCACGA CGTGAATCAT GACATTGGAG AAGACACTGA CGTAGAGGCA 001440
001441 CTCGAAGAGT CTTCGTAAGC TGTGCAGCCA CAGAAATACT AGCACTAAGA ATGCAGACAG TGCCAGCTCC CCTCCTACAA 001520
001521 TTCAGAAGGC AACAGGGTCA GCATTTCTCT TCTGGGATTA ATCCAAAGTT TTGTTTTTCT GTACTGTTAA GCAAAGTATT 001600
001601 AAATCCCATC TAACATC
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Predicted Small Protein

Name ENST00000433175.2_smProtein_761:913
Length 51
Molecular weight 5576.3488
Aromaticity 0.12
Instability index 67.762
Isoelectric point 9.30267333984
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0110909228556
Amino acid sequence MGTITGTKRQQNGSPPPLQIPTPCKHSPFPHFLFFFFEMESRSVAQAGVQ
Secondary structure LLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEELLHHHLLLL
PRMN -
PiMo -