ENST00000433175.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000433175.2 |
Source |
Gencode19 |
Same with |
lnc-CLOCK-1:2,NONHSAT096443 |
Classification |
antisense |
Length |
1617 nt |
Genomic location |
chr4-:56230138..56249563 |
Exon number |
5 |
Exons |
56230138..56231024,56231775..56231828,56232923..56233330,56241038..56241200,56249459..56249563 |
Genome context |
|
Sequence |
000001 GGTGCAATCC TGGCTCACTG CAACCTCTGC CTCCCAGGTT CAAGTGATTC TCCTGCCTCA GCTTCCCAAG TAGCTGGGAC 000080
000081 TACAGGCGTG TGCCACCACG ACCAGAGGCC AGGTGCAGTG CATGTAATCC CAGCACTTTG GGAGACTGAG ATGGGAAGAT 000160 000161 CGCTTGAGGC CAGGAGTGCA AGACCAGCCT GGGCAACACA GCAAGACCTT GATTCTACTA AAAAAAAAAA AGGATCCTTC 000240 000241 AACTTCAACA ATAATAACAC AAGGGAAGTG AAGAAAAACA CTTTCTAAGG AAATCTCTCT CTGAGCTACC ATCCTGCTAG 000320 000321 GGAGAGCCTG AAAGCAGAAT GCTGACTTGA CTAGCTCTGG TCAATGAAAG AAATCACCAG TGGAAAGGCT ACCAGGGGGC 000400 000401 TTTCTCAAAA GAGAGGGACA GTAAACTGCA AGATGAACAA CTCAATGCCA TCCAGGTCTG GATGAGAAAG AACAGTCGAG 000480 000481 AGACTGAGTT TCAGGAGTGG AAACACTCAA AGCATCATCT TCCACTTTCT TCTCCGGCTG CTAGGAAGAA GGGAAAAACA 000560 000561 CAGACCTTCT GAGGACCTGC GGAGCAAACC ACTGGCTTCA GAAAAGCAAA CAGGGACTTC CCTCTGCGCA GCAGGAAGCA 000640 000641 GTTAGCCTAG TCGGAGGCTT GACTGAAGAA ACAAATGAGG GAAGGCAGAA GTTGAGACGC AGCCAGTAGA GGAAACTCCG 000720 000721 GGAGAGGCAG GCAGCGTCAC TTGAAGAAAA GCTCTATTGT GATGGGAACA ATCACAGGAA CTAAGCGGCA ACAAAATGGC 000800 000801 TCCCCACCCC CTCTGCAAAT CCCAACTCCA TGCAAGCACT CTCCCTTCCC TCATTTTCTT TTCTTTTTTT TTGAGATGGA 000880 000881 GTCTCGCTCT GTTGCCCAGG CTGGAGTGCA GTAGCGCGAT CTCGGCTCAC TGCAACCTCC ACCTTCTGGT TTCAAGCAAT 000960 000961 TCTCCTGCCT CAGCCTCCCC AGTAGCTGGG ACTACAGGCG TGTGCCACCA CGCCTGGCTA ATTTTTTTTT TTAATTTTTA 001040 001041 GTAGAGACAG AGTTTCACCA TGTTGGCCAG GCTGGTCTCG AACTCCTGGC CTCAAGTGAT CCACCTGCCT CAGCCTCCCA 001120 001121 AAGTGGTGGG ATTACAGGTG TAAGCGACCA CGCCCGGCCT TTTAAAATCG ACTTGAGTCT CATCTCCTGA AATGCAAAAT 001200 001201 GCATTGGGCC TGTCTCTTAC TTCTGCATGT CTCATAATGC TTAGCACAGC ACAAGCCCCG AGAGCGCATC ATACACCCTG 001280 001281 GGGTGGGGAG CTCCTGGCAG GGCTGGATCC ACTCACCATT CCTGCCATCC ATTGGCACTT GGCTCAGCAC AGTTAGGCCA 001360 001361 ACAAGGACAT AATAGACAAG TCCAAAACAG TACTGCACGA CGTGAATCAT GACATTGGAG AAGACACTGA CGTAGAGGCA 001440 001441 CTCGAAGAGT CTTCGTAAGC TGTGCAGCCA CAGAAATACT AGCACTAAGA ATGCAGACAG TGCCAGCTCC CCTCCTACAA 001520 001521 TTCAGAAGGC AACAGGGTCA GCATTTCTCT TCTGGGATTA ATCCAAAGTT TTGTTTTTCT GTACTGTTAA GCAAAGTATT 001600 001601 AAATCCCATC TAACATC |
Predicted Small Protein
Name | ENST00000433175.2_smProtein_761:913 |
Length | 51 |
Molecular weight | 5576.3488 |
Aromaticity | 0.12 |
Instability index | 67.762 |
Isoelectric point | 9.30267333984 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.0110909228556 |
Amino acid sequence | MGTITGTKRQQNGSPPPLQIPTPCKHSPFPHFLFFFFEMESRSVAQAGVQ |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEELLHHHLLLL |
PRMN | - |
PiMo | - |