ENST00000437712.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000437712.1 |
Source |
Gencode19 |
Same with |
lnc-RGS3-1:1,NONHSAT134356 |
Classification |
intergenic |
Length |
3043 nt |
Genomic location |
chr9+:116381508..116384914 |
Exon number |
2 |
Exons |
116381508..116381691,116382056..116384914 |
Genome context |
|
Sequence |
000001 CTGTGGGCCA GAGGAGAGCA CTGGGTACCA GAATCACAGA TCAGGAGCTG TGGAAGGCGC TGCCCGACAG GATGGGGGAC 000080
000081 CCTGGGAGAG GGATGCAGCC ACATCCAAAC TGTGGCCCAG AAGAGGGAGT GGGAAAAGTC CTCGACCTCT CTGTCTTCCT 000160 000161 GCTGTCTTCC AATATCCTAC CTGGAAAGCA ACGGGTCTGA AAGGTAATTC TGTTCTTGAT GAGGGTGCAG GCAGCAGAGG 000240 000241 GAATTGTCAT CCTGCTGAAG ACACACAGCT CTTCCATGCT CTACCCTATG TGTAATTTGT TCTTATCTGC TCCTGGAGCC 000320 000321 ACCACCTGCT ACAGTGTAAA GAGACCCCAC AGACTCTCTG GATCAAACTA CTCACTGTCC AGAAGGAGAA AATGAGGTCC 000400 000401 TATGTCTGTG GCTAGAACCC AGGCCTCTGG GGAGCAACCC AGGGCTCCAT CCAGGGTGAC CTGAGCCTGC TCTGCTCATC 000480 000481 AGAGCCAGTC TTTACCACCC TTCATATCCC GGGAGCCCAC AGGTAGAAAG ATGGGCATTG CAGGTCACCG TGGTTCCCCC 000560 000561 ACTGAAGCAA GTTCCCTGGC TCGCGATTAG CCAGTGCTCT GCTGGTTCAT GATGCGCTCC AAATGCTAGA CCAAGAAAGA 000640 000641 AACTGGGTCG GTGGGCAGGA CACAGGACCA GCGCTCTGGG AGGAGAGCTG TTCTCAAGCA GTTTGGTGGC ATCAGAGCCT 000720 000721 CTGTGTGGTC AGTCAAGCAG GGCAGCCAAT TTCCTCTCCT TTCAGCCCTA ACTCTGGACT CCTGTACCTG GAGGGGCTCC 000800 000801 CTTTGTGCTC CTGCAGCCCA GAAGCCCTCC GAGGCTTGAC ATGAAAGAGT CGCGGGATCT TGGACTGTTC CGGTGGAAGG 000880 000881 GCTCCTAGCA AAACCCAGAT GTTTTCTCTT CTTGTATGGA TGGGAGGACC GAAGTCCAGA GAAGTGGAAT AACTTGCCCA 000960 000961 GGGTTGTGCT GAGATTTGTG AAGGTGCCGG ATGCTGGTGT GCTGGTGGCT GGCATGCTCT GAGCCCTTCC TTCCCGCTGT 001040 001041 TTCCCTGGAG TTCTGCTTGG CAACCACCCG CCTGCATTTT TGCAAAGTGA TGTCATCTGC AGATAATGGT TTTTCCGTTC 001120 001121 CTGGTGGAGC AGGAGTTCCA GATACAGTGC TTCGGGGGAG GGGCTCAAGA GAGCTGATTG TGCACTCCTC AGGCAAGTGG 001200 001201 GGGCTGCATA GACCCCCTCC CCTCTGACAG TCACATCTCA GTTGTAAGGC AAGGCACCGT CTCAGGCTTC CTGGACTCCG 001280 001281 GAACCTGGAA TGACCAAAAT GGCAGAGGCC CCAGAGACAA GCCTCCCCTG CCTCCTCCTT GTAGAGTTGG GAATCTGAGG 001360 001361 CCCAGAGAGG GCAGAGCCTT GCCCAAGCTC ACACAGCATT TACAGGCAAA ACCTTGACTC ACATCCCGAC TCCTAACATC 001440 001441 TGTGGCCACT TGCCCGTGGT TGGGGGTTTT TCACCCTCAA CACCGTTGAC ATTTTGGGCC AAGGAGTTTT GTTGTGGGGG 001520 001521 CAGTCCCTTT CATGGCAGGA TGTTTGGCAG CATCCCTGGC CTCGACCTCC TACAGGCCAG TAGCACCCCT CTCCAGTTCT 001600 001601 CAAATCCAGA CACTGCCAAA TGTCTTTCAC CTAAGTTGGG GTGGGAGAAA GTAACCCTCC AGCTCCTAAG ACCTTTATCC 001680 001681 ACTGCCATAG GCAGGAGAGG TTTCTTGAGT CCAAGCCCAA AGGGTGCTTT GTCTGAGGCT CTGACTTAAC GTCAGGCACC 001760 001761 TTCAGGATGG GAGGCAGGCC TGGAGGGGGC TATGAGGGGC TGGAGATGGT CCAGGCCCTC CTTCTGGTTA GGAACACTGC 001840 001841 TTCCTCTGAT CACTTTTCTT GGAGCAAAAC TGCCGATTTA TTTTCCTGGG GAAATAAAAA TAAATGCTGG CTGTTGTAAT 001920 001921 CTCATCCCTG ATCCCATCTG GAAAAAGCAG GCTCATGAAT CTTGGCCGCC TGAGCTCTGA GGACTGTGTC TGGCGGAACC 002000 002001 TGGAGTTACA ATGGGCCTTC GAACATCGGA ACAGTCACGG CTGACATTTC CTTTCCCGTT ACATGGCTCC TTGGAATGTG 002080 002081 AGCCCCAGGG GGCCGTCCGT GGGCAGGCGG AATTTGGTGG AAAGAAGTGC TGCACGGGCC GGAGGCCAGC TCAGCTTCTG 002160 002161 ACTTGCTGTG TGACTTTGGG CCACTTTTCT GTTCGTTTCT GGGCCTTGAT TTCTCCATCT GCAGAATGAG GGGAGCCACG 002240 002241 TTCCTCAACA AGGGGTCCAT GGACCACCTT GTATCAGAAC CATTTAGGGA ATGTGTTTAT GGCTATTCCT GATATTTCTG 002320 002321 ATTCCTCTTC CAGACCTCCT AAAGTTTTTA TGCATCTCTA AGTGATTTCG ATATATATAA GTTTTGGGAC CCACAACACC 002400 002401 AAGGACTTTG AACTTTCCAC CCAGTTTCAA GTTTGAACAC ATCACAGTTC TTCAGCCTCC TTCCCCCTCA TAACGAAGTG 002480 002481 TAGAGTTATG AAGCTAGAGG GTAAAATTAT GGGGTGGGCT GGAACTGGGC ATTGCTCCTA ACAATTATCT GCTTTCAAAC 002560 002561 TCTTGGCAGG GTCTCTGGGG TCCTTGATCC AACTGAAATC ACTGTTAAAG CACTTTATTC CTCCAGTAAT GAAACTCGAG 002640 002641 CTGCTAGTTA CAGAGTTTGG TTTCAAAATT GTGCCATTTA TTATTTTTGT TGGATTGGCT TATAAACCCT CATATAGTCA 002720 002721 TACATCATTT ATAATGCATT ATTCCATGAG AATGCATTTT CCAGATGAGA TTTATTTTTT CTGTTAAAAA CTTAAAACTG 002800 002801 TTCTTTTTTT TTTTTTAAAT GGCAGTCTTT CGCCATGTGT TACCTATTTA TACCACCTTA AGTGAAGGTC AGGAAATGCA 002880 002881 ATTTTACTTA TTCTCAATGC TCCAGGGTTG TCATTGTGAG TTTTAACTAC TGTATGCATT GATGTAAATT TTAGGGACTC 002960 002961 CAAAACTCAC TGTGCCTGAA CTATGAATGT CCCCCAAGCT GCTTAGCCCT TGTGTCTGCT TTTAAAAGTT CTGCTTTGCT 003040 003041 TCT |
Predicted Small Protein
Name | ENST00000437712.1_smProtein_218:394 |
Length | 59 |
Molecular weight | 6485.5705 |
Aromaticity | 0.0689655172414 |
Instability index | 48.3 |
Isoelectric point | 10.608581543 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0462093109152 |
Amino acid sequence | MRVQAAEGIVILLKTHSSSMLYPMCNLFLSAPGATTCYSVKRPHRLSGSNYSLSRRRK |
Secondary structure | LLLHHHHLEEEEEELLLLLLLHHHHHHHHLLLLLLEEEEELLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |