ENST00000438872.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000438872.1 |
Source |
Gencode19 |
Same with |
lnc-CCDC51-1:2,NONHSAT089568 |
Classification |
antisense |
Length |
885 nt |
Genomic location |
chr3-:48481762..48488036 |
Exon number |
2 |
Exons |
48481762..48482272,48487663..48488036 |
Genome context |
|
Sequence |
000001 GGTCCACGGG CGGGATTCGG CAGGTTTGCT GCAAGGACTC AGTGCGGCGC GACCCGTTAC CGGAGAGGCG GGCCGGAGGC 000080
000081 GCACCAGCTC CGCCGCGCTG GTGGCTTTGC GCTCCCTCCC TGGCACTCCG TGGAGGAGGG CCGCGCAGGA GCAGCCTGCC 000160 000161 CTAGCATTCA CGCGTGTTGC GTTTGAGTCG AGCCAGGCAT CATTCAGGGA TGTGGTCTCC GTGACCTCGC TTTCCTTCTG 000240 000241 CCGCCAGACC CACCTCCCAC AAACCCCTAG GCTTTCTTGA GGAGAGTGGA ATTTGTTGGG TGAGGAGTAT GAATAGAGCT 000320 000321 GTCGTGTGCA GACATCTTCG GGTTTAGTGA ATGTTTCACA TGTGTACATT TGAGCTCTTC CTAAGGAATG GAAGCCCAGA 000400 000401 CTGCCTGGGA GGCAGGAGAC CTCGTTTCCA GCTCCCGGCC CTTACTGCCG CTGCAAATCC TAGACTGGCT AGAGACCATT 000480 000481 CGCTGCAGCG GACGTCGGAA AACGAGACCT CGCAGTTCAG GAGGCAGGAA AAAGACATGC CCGCGCCCTC ATCCCAATAG 000560 000561 GTGCTCATAG CGTTTGGCCA GCTTGAGCTC CATTCGGCCC CCACTTACCC AAGGGCCCCT TCCCCGCGGC CTTCGCTTTT 000640 000641 AGCTCCTCGA GTTTCTTCTG CTCCTCTTTT TGTTTCTGCT TGAAAGCCTT ATCTTCCTGG GGAGAGGCAG AGCGTGTTCA 000720 000721 ACTCAGGCCT GTCTCCCAGC GCCCCCGCAC CCGCCAGTGC CTCCGCGCCC GCCCTCACCT CGTCCATCTC CTTGGCCTGC 000800 000801 TTCTTGGGCT GTTTCAGTGG CTTCTTCTTG CCACCTGTGG GCGACACGAG CACGTTCGGC CTGCCCCTGC CGCCCGGTCC 000880 000881 CCACC |
Predicted Small Protein
Name | ENST00000438872.1_smProtein_350:559 |
Length | 70 |
Molecular weight | 7905.8474 |
Aromaticity | 0.0724637681159 |
Instability index | 86.1202898551 |
Isoelectric point | 9.66546630859 |
Runs | 10 |
Runs residual | 0.00559621179509 |
Runs probability | 0.0444267797209 |
Amino acid sequence | MFHMCTFELFLRNGSPDCLGGRRPRFQLPALTAAANPRLARDHSLQRTSENETSQFRRQE KDMPAPSSQ |
Secondary structure | LEEEEEEEHHHLLLLLLLLLLLLLLLLLHHHLLLLLLHHHLLLLLLLLLLLLLHHHHHHH HLLLLLLLL |
PRMN | - |
PiMo | - |