ENST00000439960.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000439960.1

Source

Gencode19

Same with

lnc-DNAI1-1:1,NONHSAT130857

Classification

antisense

Length

631 nt

Genomic location

chr9+:34521525..34524239

Exon number

3

Exons

34521525..34521741,34522255..34522394,34523966..34524239

Genome context

Sequence
000001 GACAGGGGCC AGGGCTGGAG TTGGGACTGG ATTCAGAGAG AGAGTCAACG TCGGCAGAGC GAGAATGGCA GGCCCAGCAG 000080
000081 AGGATGACCC AGAGCAGCAG CAGCAAGAAG CCCACGAGAC CGTTGCAGAC GATGGCGATG AGGGCCCCCT GGGAGATGGC 000160
000161 TGCCCCCATG ACAGGCAGCA CCCTCAGACC AGCACAGACA GTGGAGCTGC CTCAATGGAC TCCAGCCAGC CCGACCAGGA 000240
000241 GACCTCCAGA GGCGCCAGCT TGCACAGAGG GAACTTTGTG GAGGCCCTGG CAGGCATGTG CAGGCTCTGT GCGTCCAGGG 000320
000321 CTGTGTGCCT CTATGTGGGG CTGCCTCTCT GGGTCAGGCC AGTGATTGTC ACCTATTCTG ATCCGGCCGT CTTCTCATCC 000400
000401 CGCTCTACAT GCTCTCCTTG GAGGATCACA TCCCTGAAGC TATATCATGA AGACTCCCAG TGCTCCCAAG TCTAGCCTTA 000480
000481 ACTTCTCTCT GGAATCCTAG ACTCATATAA CTAAGTGCCT ACTGTAATCG GGGCAGTATT GATTCCTGGT TCACTTACTA 000560
000561 ACTTTGTGAT CTTGAGCAAG TTACTAAATC TCTCTTAGCC TCAGCTTCCT CATCTGTAAA ATGGTTGTAA T
[back to top]

Predicted Small Protein

Name ENST00000439960.1_smProtein_83:364
Length 94
Molecular weight 9986.4213
Aromaticity 0.0537634408602
Instability index 81.4107526882
Isoelectric point 9.68524169922
Runs 12
Runs residual 0.00189167662286
Runs probability 0.0434773008303
Amino acid sequence MTQSSSSKKPTRPLQTMAMRAPWEMAAPMTGSTLRPAQTVELPQWTPASPTRRPPEAPAC
TEGTLWRPWQACAGSVRPGLCASMWGCLSGSGQ
Secondary structure LLLLLLLLLLLLHHHHHHLLLLHHHLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLL
LLLLLLLHHHHHLLLLLLLLHHHHEEEELLLLL
PRMN -
PiMo -