ENST00000440079.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000440079.1

Source

Gencode19

Same with

lnc-MRPS25-1:5

Classification

intergenic

Length

1527 nt

Genomic location

chr3-:14986531..14989012

Exon number

2

Exons

14986531..14987661,14988617..14989012

Genome context

Sequence
000001 GCACCGGAAC GCCGCAGCCG GCGCTCGGTC CATCCGGCCC GTGGGCTGTG GGGCCCCGGG CGGCGGCGGC TACGTAGCTG 000080
000081 CCGCCGGCCT TGGCCGCGGC CGGGCGGGCG GATATGTGGC TTAAATGGCG CAGGCGTCGG GGCCTAGAGG CTGAAGGGCT 000160
000161 GGTCGTCCTA AAAACTCGTG GACGTCGCGC ACGGTTACCC GGACGCAGGC CCGCCCCTCT GGGGAACCGC GAGCTCCTCG 000240
000241 CAGCTGGGTG GGGACCGTCC TCGCAGTGGC GGCCTCCACC CTGCCTTCTC GCTTAGCCAA GGCTTCTGGA AGGCTCGCAA 000320
000321 AGTGTCTGTT GTTGGAAGAA GCCGGGCCCT GACTGGCGCG ACGGATTCTC CCAGCCGCTC AGCAGAGCGT CTGTAGAATA 000400
000401 TGCTTTTTGT CTAATGATGT TAGATAAAAA GCAAATTTGG AGCAGTTTTC TTATTCGAGT TCAAAATGGT TCATAAAGCA 000480
000481 GCGAAGACAA CTCAAAACAT CAGTAACACA TTTGGCCCAG GAACTGCTAA CAAACATACA GTGCAGTGGT GGCTTAAGAA 000560
000561 GTTTTGCAAG GAAGAGAGCC TTGAAGATGA GGAACGTGAT ATGGGCCATG GGAAGTTGAC AACGACCAAT TGAGAGCAAT 000640
000641 CATTGAACTA CATGAAAAAT TACAGAAGAA CTCAGCGTTG ACTATTCTAC GGTCATTAGG GTCGTTCAGC ATTCGAAGCA 000720
000721 AATTGGAAAG GTGAAAAAGC TTGATAAGTG GGTGCCTCAT GAGCTGAGCG GAAATCAAAA CTATCGTTTT GAAGTGTAGT 000800
000801 CTTCTTTTAT GCTACGCAAC AACAAACCAT TTCTCAATCG GATTGTGACA TGTAATGAAA AGTGAATTTT ATACAACAAC 000880
000881 CAGCTCAGTG GTTGGACCAA GAGGCAGCTC CAAAGCAGTT CCCAAAGCCA AACTTGCACC AAAAAAAAGG TCATGGTCAC 000960
000961 TGTTCGGTGG TCTGCTGCCC ATCTGATCCA CTACAGTTTT CTGAATCCTG GTGAAACCAT TACATCTGAG AAGTATGCTC 001040
001041 AGCAAATTGG TAAGATGCAC CGAAAACTGC AATACCTGCT GCCTGCATTG GTCAACAGAA AGGGCCCAAT TCTTCTCCAC 001120
001121 GACAACACCT GACTGCGTGT CGCACAACCA GTGCTTCAAA AGTTGAAGGA ATTGGGCTAC AAAGTTTTGC CTCATCCACC 001200
001201 ATATTCACCT GACCTTTCGC CAACTGACTA CCACTTCTGC TAGCATCTTG ACAACTTTTT GCAGGGAAAA CACTTCAGCA 001280
001281 TGGTGCAGAA AATGCTTTCC AAGAGTTCGT CAAATCCTGA AGCACGGATT TTTATGCTAC AGGAATAAAC AAACATTTCT 001360
001361 CATTGGCAAA AATGTGTTGA TTGTAATGGT TCCTGTTTTG ATTAATAGAA TATGTTTTAG CGTAGTTACA ATGATTTAAA 001440
001441 ATTCGCAGTC TGGAAATTTA ATTTTTGCAT CAACCTAATA TTTCTATGGT AAATCCTTGC AAACATGGAA ACAATGCATT 001520
001521 TGGCCCA
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Predicted Small Protein

Name ENST00000440079.1_smProtein_113:295
Length 61
Molecular weight 6868.07
Aromaticity 0.0666666666667
Instability index 86.93
Isoelectric point 12.1483764648
Runs 9
Runs residual 0.000265957446809
Runs probability 0.0442893874266
Amino acid sequence MWLKWRRRRGLEAEGLVVLKTRGRRARLPGRRPAPLGNRELLAAGWGPSSQWRPPPCLLA
Secondary structure LLLLEEELLLLEEEEEEEEELLLLEELLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLL
PRMN -
PiMo -